Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0037 ATGGCTCACGAAAGCAAGCGGCTGGAGAATGACGACAAGCCTACACTGCCGCAGTATTACAATCCTGAGAAGCAAGACGGCGATGATGAAGAGGGCATGGGACCGGAGGATCGTTCCGAGAATCAGCCTTCGGCCGAAGGCAGCGGTGGAGGAGAAAGGGTGGTAAAGCAACAAAGTCTCTATCTTGACACTGAACAAGCAAAACTCCTGTTTAAGCAAGAAAGTTTCGATATTGACTCCGAACAAGTGAAAATCGGGTTAAAGCAAGCAAATTTCGATCTCGAACTTGACACCGAGCAAGAGAAAATCGACCACTTAACGAAAGGCACCGAAATTGTCAAGAAAAGCCGCGGCAGAAAGCGTAAGTCAGAGACGGCGGCCTCTGGGAACAAGGTTTCGGCAGAGGCCACGAGGCGTAGTGCTAGAGCGTCGAAGAAATCGTCCCCTCCTGTTTACTTTCACGACGACGAAGACGAACCTAGAAAAAGGAAACGTTGGAGGAAAGGTCGTAAAAAGACAAAAATTGAAGAAGGTGCAGGAGCGGTGGACAATTGTGATTTAGCTGTGGAGAAGTTAGGACATTTGAAGCAGAGTGACGAAGACGAACCTAGAAAAAGGAAACATAGGAGGAGAGGTCGTAACAAGACAAAAATTGAAGAAGGTGCAGGAGCGGAGGACAATGGTGATTTAGCTGTGGAGAAGTTAGGACATTTGAAGCAGAATGATCCTGAGGTTGCCTTGGTGGACTGTGATCTCGAAGAAGTAGAAAACGGAGATAAGAAAATAACAAGGGGTAGGAAGCCGGCTCAAAACGCGAAGGCAGAACACGGAATATCGGATGATCATGGTTCAATGAGAACGGCTAGAGACTCTCCAGAAAGCAGATCGACTAAAGGCTATAGTTTGAGGGCTTCTCAATCTGAAGTTAAGAAGCAGGAGACGACCAAAATAAACAAGCATGATCCTGAATGGATTGAAAAGGTGTCCTTAATGTGCCATCAGTGTCAGAGAAATGATAAGGGGGAGGTTGTTAGGTGTACAAAATGTAAGCGGAAAAGATTTTGCATCCCGTATCCTCATTTGAGAGAGGAAGACATTGCTGAGGAGTGTCCTGTGTGCCGTGGAAACTGCAATTGCAAAGCATGTCTGAAATCTGATAAATTAATTGCAACAATGAAGAACAAAGCAAAAGAGAAGAAGGAAGCAAAACACGTCACAACTGAGGAAGTTGAATGCTATAAGTATCTGCTATCTGTGCTTCTTCCATATTTAAGGCAGCTACATGAAGAACAAATGATAGAGAAGGAGATTGAAGCTAAGAGACAAGGTGTCTCACTTTCAGAGCTTCAGGTAGGAAGGACAGATTGCACGGATAATGAGCGTGTTTACTGTGACAATTGTAGAACTTCAATTTTTGATTATCACCGAAGCTGTCAAGAATGTTCTTTAGACCTCTGTCTGGTCTGTTGCCGTGAGATTTGTCAGGGGCAATTGGTTGGAGGTGCAGCGCCAGTTGAGTCTGAGTTTGTCAGCTGGGGGCTAAAATATATGCATGGTGAGGAAAAGGAGTTAACAACTACTAAATTAAAGGTTGAGATGAAGAGTGAGGATCGTGATTGGTCCAGATCTGGTTTGAAGGTGACAAGTGATGGTAGCATCTCTTGTCCAAGGGATCATGGTGGTTGTGGTTGTAGTTATCTTGAACTTCGATGTATATTTCCTGATAACTGGATTTCTGAACTTGTAAAGAAAGCAGAAGATATGGCCAAAGCGTATAAGCTTGATTATGCAACACAGATAAGTAACCAGTGCTGTTCATGTTTCAACCTAGATGGCATCAACAACAATGTTGGAAATGATAATAGGAGGAAGGCTGCTTCTCGTGAAGATCCCAATGTTACTGACAACTATATATACTGTCCAAGGGCTGTAGATTTAGGACCTTCGGACCTGAAGCATTTTCAGTGGCACTGGAGTAAAGGAGAGCCAGTGATTGTCAGTAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGAAGTCTAAGGGCCTTCAACATTTGGAAGTGAAGGTCCTTGATTGCTTGGACTGGTGTGAGGGAGACATCAATATCCACCAATTCTTTACAGGGTACACAGAAGGTCGAAAAGATTTTGCTATGTGGCCTCAGTTATTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACGATTACCACGTCATTGTGCTGAGTTCATTTCTTCCTTACCGTACAAGGAATATACAAATCCTCATAATGGTGTTCTAAACCTTTATTCAATGTTGCCGGACAAGTTTATAAAGCCGGATATTGGTCCGAAGACATATATAGCTTATGGAATTCCTATGGAGCTTGGGAGGGGTGATTCAGTGACAAAGCTTCATTGTGACATGTCTGATGCAGTGAATGTTTTGACTCATACTTTTGAGACGCCCCTTGATGCTGATCTCCTTGCGAAAATAGAGGAGTTGAAAAAAAAACACCTTGAACAAGACAGAGAGGATCTACATGGCGATCTGCGAGATGTGGAAGCTAATGTTGAAAATGAAAATACTGCAGTTTTTAAAAATAAGTTGCTTGGATATGATTCTGTTGAGGGAGGTGCTCTCTGGGATATTTTTAGGAGACAGGATGTCCCCAAACTGCAGGAATACCTTAAGAAGCACGTAAAAGAATTTAGGCATGTCAACTGCATTCCATTGCGGGAGGTTGTTCATCCTATCCATGACCAGACCTTTTATTTGACTATGGATCATAAGAGGAAGCTGAAGGAGGAATATGGAATAGAACCATGGACATTTGTTCAGAAACTGGGAGACGCAGTGTTGATTCCTGCTGGTTGTCCTCATCAAGTCAGAAACCTCAAGTCATGCATCAAGGTTGCTCTGGATTTTGTGTCACCTGAAAGCATAGATGAGTGTTTTCGTTTAACACAAGAATTTCGCACACTTCCCATTAATCACAGGGCTATTGAGGACAAATTGGAGGTAAAAAAAATGCTGATTCATGCAATGAGCAACGTGGTGGGGAAATTGGAGGGAGCAAGGGAGAATGAAGATAATGCTCAATTGGAAGCAGGATCTTCCTAA 3144 0.4323 MAHESKRLENDDKPTLPQYYNPEKQDGDDEEGMGPEDRSENQPSAEGSGGGERVVKQQSLYLDTEQAKLLFKQESFDIDSEQVKIGLKQANFDLELDTEQEKIDHLTKGTEIVKKSRGRKRKSETAASGNKVSAEATRRSARASKKSSPPVYFHDDEDEPRKRKRWRKGRKKTKIEEGAGAVDNCDLAVEKLGHLKQSDEDEPRKRKHRRRGRNKTKIEEGAGAEDNGDLAVEKLGHLKQNDPEVALVDCDLEEVENGDKKITRGRKPAQNAKAEHGISDDHGSMRTARDSPESRSTKGYSLRASQSEVKKQETTKINKHDPEWIEKVSLMCHQCQRNDKGEVVRCTKCKRKRFCIPYPHLREEDIAEECPVCRGNCNCKACLKSDKLIATMKNKAKEKKEAKHVTTEEVECYKYLLSVLLPYLRQLHEEQMIEKEIEAKRQGVSLSELQVGRTDCTDNERVYCDNCRTSIFDYHRSCQECSLDLCLVCCREICQGQLVGGAAPVESEFVSWGLKYMHGEEKELTTTKLKVEMKSEDRDWSRSGLKVTSDGSISCPRDHGGCGCSYLELRCIFPDNWISELVKKAEDMAKAYKLDYATQISNQCCSCFNLDGINNNVGNDNRRKAASREDPNVTDNYIYCPRAVDLGPSDLKHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQKSKGLQHLEVKVLDCLDWCEGDINIHQFFTGYTEGRKDFAMWPQLLKLKDWPPSNLFEERLPRHCAEFISSLPYKEYTNPHNGVLNLYSMLPDKFIKPDIGPKTYIAYGIPMELGRGDSVTKLHCDMSDAVNVLTHTFETPLDADLLAKIEELKKKHLEQDREDLHGDLRDVEANVENENTAVFKNKLLGYDSVEGGALWDIFRRQDVPKLQEYLKKHVKEFRHVNCIPLREVVHPIHDQTFYLTMDHKRKLKEEYGIEPWTFVQKLGDAVLIPAGCPHQVRNLKSCIKVALDFVSPESIDECFRLTQEFRTLPINHRAIEDKLEVKKMLIHAMSNVVGKLEGARENEDNAQLEAGSS 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0037 1047 MobiDBLite consensus disorder prediction 98 228 - -
Acco12g0037 1047 Pfam JmjC domain, hydroxylase 887 983 IPR003347 -
Acco12g0037 1047 MobiDBLite consensus disorder prediction 259 293 - -
Acco12g0037 1047 MobiDBLite consensus disorder prediction 294 308 - -
Acco12g0037 1047 MobiDBLite consensus disorder prediction 149 163 - -
Acco12g0037 1047 Coils Coil 844 864 - -
Acco12g0037 1047 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 120 1035 IPR045109 GO:0032454|GO:0033169
Acco12g0037 1047 FunFam Transcription factor jumonji domain-containing protein 635 1009 - -
Acco12g0037 1047 MobiDBLite consensus disorder prediction 1 58 - -
Acco12g0037 1047 MobiDBLite consensus disorder prediction 189 206 - -
Acco12g0037 1047 Gene3D Cupin 643 1009 - -
Acco12g0037 1047 ProSiteProfiles JmjC domain profile. 769 1000 IPR003347 -
Acco12g0037 1047 SMART cupin_9 750 1000 IPR003347 -
Acco12g0037 1047 MobiDBLite consensus disorder prediction 98 113 - -
Acco12g0037 1047 MobiDBLite consensus disorder prediction 259 317 - -
Acco12g0037 1047 SUPERFAMILY Clavaminate synthase-like 647 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0037 Acco-ChrAcco12 410284 424938 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco12g0037 JmjC 2e-14 CL0029