Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2480 ATGCCTCCAACCCTCCGATTCCTCAATTCTCTCGACCGCCCCGCTCCCCCGCCCGAGGCCGTCGCCGTCGAATCCGACTTCGTCGTTATTCTCGCCGCCCTCCTCTGCGCCCTCATATGCGTCGTCGGCCTCATCGCCGTCGCCCGCTGCGCCTGGCTCCGCCGCGGATCCGGTGCCTCCGCCTCCCCCTCCCGGGCTCTGGCCAACAAGGGTCTCAAGAAGAAAGTTCTGCAGTCGCTCCCGAGATTCACCTACGTGAACGGAAGTCCAACTAAGTGGGTGGTGACGTCGGAGTGCGCGATTTGCCTGGGGGAGTTCGCCGACGGCGACGAGATCCGGGTCCTTCCTCAGTGCGGGCACGGCTTTCACATGGCCTGCATCGACACGTGGCTGGGGTCCCACTCTTCGTGCCCCTCTTGTCGGCATATCCTGGCGGTGGCCCGGTGCCAGAGATGCGGGCAGTACCCGGCGGGATCGGCCGGAGCCGCCAGCAGCTCCGCCGGTGAACCTGAGCTGAAGTCCAGAGAGGACGGCAATAATAATAGCATAAGCAGCGGGTTTAATAATTTCTTGCCTTGA 579 0.6373 MPPTLRFLNSLDRPAPPPEAVAVESDFVVILAALLCALICVVGLIAVARCAWLRRGSGASASPSRALANKGLKKKVLQSLPRFTYVNGSPTKWVVTSECAICLGEFADGDEIRVLPQCGHGFHMACIDTWLGSHSSCPSCRHILAVARCQRCGQYPAGSAGAASSSAGEPELKSREDGNNNSISSGFNNFLP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2480 192 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 153 - -
Acco11g2480 192 Pfam Ring finger domain 98 141 IPR001841 -
Acco11g2480 192 CDD RING-H2_EL5-like 98 141 - -
Acco11g2480 192 SMART ring_2 99 140 IPR001841 -
Acco11g2480 192 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Acco11g2480 192 FunFam E3 ubiquitin-protein ligase ATL6 60 147 - -
Acco11g2480 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 146 IPR013083 -
Acco11g2480 192 SUPERFAMILY RING/U-box 81 146 - -
Acco11g2480 192 MobiDBLite consensus disorder prediction 161 192 - -
Acco11g2480 192 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2480 Acco-ChrAcco11 37823904 37824482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2480 5 181 C3H Transcription Factor Family AT1G76410 56.522 2.49e-61 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2480 11 37823904 37824482 Acco12g0355 12 3042855 3043526 CCT
Acco11g2480 11 37823904 37824482 Acco11g2480 11 37823904 37824482 ECH