LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g2476	ATGTATCACATTTTAATTGACAAGGATCCTAATGATTTAAACCCTTGCTTGAGCACTAATTGCAGTCTTTGCACCAGCTTCAGTTTGTTGATTTTAGCATCATACTCTTTGAGATTCCTGATGAAATTTCGATTTCTCTGCACACCACGTCTTGTGATCATATTGCTAATCGTCTTTTGCTCGAGCTTAACCGGCGACGTTTCGGTATCAGAGTCAGAGAGCTCCCAAGTCTCATTTGCAGGCAATCGTGATTTAGACTTCAAGGGCTTAGCGTTACCTGCTAGCCGCTCTCCTCTGTCTCCTCCAGCTAAGCCTAGCACGGTACTGTTTGTTGCCCCGGATCAAAATGGGACAATACATTTGGTGGAGAGCGGTTCCATGAGGATAATATGGTCATTTCCCACAGGATCACCAATTTACAAGTCATATCAAGCTCCTCTAAACAAGGATAATGATAAAGAAAAGGCATCTGGACCCAGTAATGAGTTCATAGATGTCGGAGATGACTGGAGTTTATATCAAAGAAAGTCCTTTGGTAAAATGAGACTCTTGACATCTATTGAAGATATTGTTAAAGCTACACCTAAATTATCAAATGATGGAGTTGTTACACTTGGATCTAAAAGAAGTACTGTTTTTGAAGTTGATGCTAAAACTGGAAGGATCTTTCAAAGTTACACTGCTTCAGATTTTGATAATGCCTTTACACTGTGGAGTGATGACAGGCAAAGTGTTCAAAATTTTCTCGCTACTAAGAATGAGGAGCTGGCAAAGTCTGATCCTCTTAAGCTTCATACGCCAAAGCTGCTACTAATGTTATTTAGGACAGATTATTCTCTACAAGCTGTTAGTCCTGGATCAGACAAAGTTGTATGGAGTATGGCAGTAGCCGAATTTGAGGCTGTGTTACATTGCCAACGTAATGAAAATCCAATTGATGGCGCATTATTTGATTCAGAGGGCAAGCATACTTGTGATGCTGGCCTTGATTTTGCTTTGCCATACCCATGTTGGGTGAAGAAAAAAGTATACCGTCTACCAAAAAACTTTGTGGTCCAACCTTCAATTGTTGAGAGATTACCTGAGGCTAATTATGATAACGAAATGCTCCCAGTGCCCACTTCAGACCTGATGCTTCCTGTGCAGCCCAATAGTGATAGATATTTAAAAGGCCATGATAATATTATGATGCTTCCCATGCCTGTGCCAACTTTGTTACCTCCTCTGCTTCCAGAAATGGTCAATAGTGATGACACATTTGAGCTTGCTCAGCCTGGGACACAGATTACAACACATGAGGAAGTTAGTCTGAAGAAAGAGATTTCATGGTTATTAAGTTTGGCTCTGGTGCTGTTGATAGTCTCTTTCCTGGTATGGATAATTTTCGGGTTAGTTAAAAAGCCATTGAAATTGAAAGGCCAAAATAGTGAGCTTGATTTAAATACTACTCTTAAGAAAAGGAAAACAGGAAAGTCAGGAAAGAACAATGGAATTGTTGACAAGAAGTTTAAGCCATTGGTATCATCAGATGACAAAGTAATGGCACATGGTAGAGATGATAAAGAACCTCGGCAGTATGTTAATAAAGTCAATGGATGTGCTGATGGGCGCAAGATTGGTAAACTATTTGTATCAAATAAAGAAATTGCCAAGGGAAGCAATGGAACCATTGTTCTAGAGGGAACATATGAGTGTCGAGAAGTTGCTGTAAAACGTCTTGTTCAGGCTCATCATAATGAGGCCTTTAAAGAAATTCAGAACCTTATTGCATCTGACAATCACCCAAACATTGTTCGATGGTATGGGGTGGAAAATGATCAAGATTTTGTCTACCTTGCATTGGAGCGTTGTTCATGTAATTTAGGTGATTTAATTCAGATTTACACAGACATAGTGGAAAACTCAGCATTTAGCGAGAACCAAACTTTAAAGGCTCAATTGGAGATAGGAAAGCAAAATATGCAGATTCTTTGGAAAGCAAATGGCTTCCCATCACCTCTCCTATTGAAGCTAATGAGGGATATAGTTTCAGGGCTTTGTCATTTGCATGAACTGGGAATGGTACATCGGGATTTGAAACCCCAAAATATTTTGATAACCAATGAAAGATCTTTATGTGCAAAGCTTTCCGATATGGGCATTAGTAAACGTCTTTTTGAAGATATGTCATCTTTTGGTCATAATGGTACTGGATGTGGTAGTTCAGGCTGGCAAGCACCAGAACAACTTGTTCAAGGACGTCAAACACGGGCTGTAGATTTATTTAGTCTAGGTTGTGTCTTATTTTTTTGTTTAACTGGGGGACGACATCCATTTGGAGAACGTCTTGAACGTGATCTTAATATTGTGAGAAATCAAAAGGATCTTTTCTTAGTGGATTTTATTCCTGAAGCAGAGGATCTTATTTCTTGTCTATTAGACCCTGAGCCTAATCTAAGGCCCAAAGCAGTTGAAGTTCTGCAACATCCATTCTTTTGGGATTCTGAAATGAGACTTTCTTTTCTTCGCGATGCCAGTGATAGAGTGGAATTGGAAGATAGGGAAACTAATTCTGATCTTTTGAAGGCAATGGAAGGTAGAGCACCGGTGGCTTTAAATGGGAACTGGGATGAAAAGATGGAACCAGCATTCATTGGTAACATCGGCCGTTACCGGCGTTATAAATATGACAGTGTTCGAGACTTGTTACGAGTCATCAGAAACAAGCTGAATCACTTTAGAGAATTGCCTCAGGAAATTCAGGAACTTATAGGACCTATTCCAGAAGGATTCAATCACTACTTTGCAAGTCGGTTCCCTAGACTCCTAATTGAAGTGTATAAAGTAATGTGCAGATATTGCAAGACTGAGGAATGTTTTAAGCGGTACTTTAAAACCGTTCAGTAG	2886	0.3964	MYHILIDKDPNDLNPCLSTNCSLCTSFSLLILASYSLRFLMKFRFLCTPRLVIILLIVFCSSLTGDVSVSESESSQVSFAGNRDLDFKGLALPASRSPLSPPAKPSTVLFVAPDQNGTIHLVESGSMRIIWSFPTGSPIYKSYQAPLNKDNDKEKASGPSNEFIDVGDDWSLYQRKSFGKMRLLTSIEDIVKATPKLSNDGVVTLGSKRSTVFEVDAKTGRIFQSYTASDFDNAFTLWSDDRQSVQNFLATKNEELAKSDPLKLHTPKLLLMLFRTDYSLQAVSPGSDKVVWSMAVAEFEAVLHCQRNENPIDGALFDSEGKHTCDAGLDFALPYPCWVKKKVYRLPKNFVVQPSIVERLPEANYDNEMLPVPTSDLMLPVQPNSDRYLKGHDNIMMLPMPVPTLLPPLLPEMVNSDDTFELAQPGTQITTHEEVSLKKEISWLLSLALVLLIVSFLVWIIFGLVKKPLKLKGQNSELDLNTTLKKRKTGKSGKNNGIVDKKFKPLVSSDDKVMAHGRDDKEPRQYVNKVNGCADGRKIGKLFVSNKEIAKGSNGTIVLEGTYECREVAVKRLVQAHHNEAFKEIQNLIASDNHPNIVRWYGVENDQDFVYLALERCSCNLGDLIQIYTDIVENSAFSENQTLKAQLEIGKQNMQILWKANGFPSPLLLKLMRDIVSGLCHLHELGMVHRDLKPQNILITNERSLCAKLSDMGISKRLFEDMSSFGHNGTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCLTGGRHPFGERLERDLNIVRNQKDLFLVDFIPEAEDLISCLLDPEPNLRPKAVEVLQHPFFWDSEMRLSFLRDASDRVELEDRETNSDLLKAMEGRAPVALNGNWDEKMEPAFIGNIGRYRRYKYDSVRDLLRVIRNKLNHFRELPQEIQELIGPIPEGFNHYFASRFPRLLIEVYKVMCRYCKTEECFKRYFKTVQ	961

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g2476	961	Gene3D	Transferase(Phosphotransferase) domain 1	648	827	-	-
	Acco11g2476	961	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	687	699	IPR008271	GO:0004672\|GO:0006468
	Acco11g2476	961	CDD	RNase_Ire1	829	957	-	-
	Acco11g2476	961	ProSiteProfiles	KEN domain profile.	828	959	IPR010513	GO:0004540\|GO:0006397
	Acco11g2476	961	FunFam	Serine/threonine-protein kinase/endoribonuclease IRE1a	650	827	-	-
	Acco11g2476	961	Pfam	Protein kinase domain	545	825	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco11g2476	961	SUPERFAMILY	Protein kinase-like (PK-like)	543	830	IPR011009	-
	Acco11g2476	961	ProSiteProfiles	Protein kinase domain profile.	543	825	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco11g2476	961	Gene3D	Phosphorylase Kinase; domain 1	529	615	-	-
	Acco11g2476	961	SMART	PGNneu	890	944	-	-
	Acco11g2476	961	PANTHER	IRE1-RELATED	182	959	IPR045133	GO:0004521\|GO:0004674\|GO:0030968
	Acco11g2476	961	SMART	serkin_6	543	825	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco11g2476	961	Pfam	Ribonuclease 2-5A	831	957	IPR010513	GO:0004540\|GO:0006397
	Acco11g2476	961	Gene3D	KEN domain	828	961	IPR038357	-
	Acco11g2476	961	FunFam	Putative Serine/threonine-protein kinase/endoribonuclease IRE1	535	615	-	-
	Acco11g2476	961	FunFam	Serine/threonine-protein kinase/endoribonuclease IRE1	829	961	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g2476	Acco-ChrAcco11	37794024	37800028	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g2476	569	824	MAP Kinase Kinase Kinase	AT3G06030	30.000	3.82e-25	110

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	IRE1	Acco11g2476		Pkinase	9.7e-40	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco11g2476	11	37794024	37800028	Acco11g2476	11	37794024	37800028	ECH