Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2461 ATGGGTCTATGCTTTGGGTCTCTCGCCCATGATGACAGAGCGGCGTCTAGTATCAACAGAAATCCATATTCAGGTTCAGCGAGTACCGACAGTAAGAACGTGGGGTTCTCTACTACGAACAGCAGTGCCGCAAAGAGTCAATTTTCAGAACTAGCAAGTGGGAACCTCGGGGATTCCCTTCCTGCCCCCAATGGACAAATTCTAGAAACTCCAAACCTGAACGTATTTAATTTTGTAGACTTGAAAGCAGCCACGAAGAACTTCAAACACGATACATTGCTTGGTGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGCTAGATGAGAAGACACTGACACCATCTAAGGCGGGATCTGGAATTGTGGTTGCTATTAAAAAATTGAACCCAGAAAGTATGCAAGGATTCCAAGAGTGGCAGTCAGAAGTCAATTTCTTAGGAAGGCTTTCCCATCCCAACTTGGTCAAGCTATTGGGTTACTGTTGGGATGCTGAGGAGCTGCTGCTTGTGTATGAGTTCATGCCAAAGGGAAGTTTGGAGAATCATCTTTTCAGAAGAAATCCTAACATTGAACCACTTCATTGGAACATGCGACTCAAAATAGCTATTGGTGCAGCTCGAGGCCTGGCCTTTTTGCACACTTCAGAAAAGAAAGTGATATACCGAGATTTCAAGGCCTCAAATATATTACTTGATGGGAATTATAATGCAAAAATCTCTGACTTTGGCTTGGCGAAATTGGGGCCATCGGCAGGAGAATCACATGTTACAACTAGGGTTATGGGCACTTATGGCTATGCTGCTCCAGAATATGTTGCTACAGGGCACTTGTATGTGAAGAGCGATGTGTATGGATTTGGCGTAGTGCTGCTTGAAATGCTGACAGGTTTGAGGGCACTTGATACGAAGCGACCAAGTGGGCAGCAGAATCTGGTTGAATGGGTGAAGCCGTATCTGTCGAGCAAGAGAAAGTTGAAAACAATTATGGACGCCAGGATTCAGGGTCAATATTCACTCAAGGCAGCATCACAGGCTGCTAAGCTTACCCTCAAATGCCTACAACCCGATCCCAAGCACCGTCCTTCCATGAAAGAAGTAGTTGAGGAATTGGAAGGCATTGAAGAATCAAAGACTACGTAA 1140 0.4482 MGLCFGSLAHDDRAASSINRNPYSGSASTDSKNVGFSTTNSSAAKSQFSELASGNLGDSLPAPNGQILETPNLNVFNFVDLKAATKNFKHDTLLGEGGFGKVYKGWLDEKTLTPSKAGSGIVVAIKKLNPESMQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDAEELLLVYEFMPKGSLENHLFRRNPNIEPLHWNMRLKIAIGAARGLAFLHTSEKKVIYRDFKASNILLDGNYNAKISDFGLAKLGPSAGESHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGLRALDTKRPSGQQNLVEWVKPYLSSKRKLKTIMDARIQGQYSLKAASQAAKLTLKCLQPDPKHRPSMKEVVEELEGIEESKTT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2461 379 CDD STKc_IRAK 94 373 - -
Acco11g2461 379 MobiDBLite consensus disorder prediction 18 39 - -
Acco11g2461 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Acco11g2461 379 ProSitePatterns Protein kinases ATP-binding region signature. 94 127 IPR017441 GO:0005524
Acco11g2461 379 Gene3D Transferase(Phosphotransferase) domain 1 174 379 - -
Acco11g2461 379 FunFam Serine/threonine-protein kinase BIK1 58 173 - -
Acco11g2461 379 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g2461 379 FunFam Serine/threonine-protein kinase PBS1 174 379 - -
Acco11g2461 379 Pfam Protein tyrosine and serine/threonine kinase 91 370 IPR001245 GO:0004672|GO:0006468
Acco11g2461 379 SUPERFAMILY Protein kinase-like (PK-like) 66 371 IPR011009 -
Acco11g2461 379 Gene3D Phosphorylase Kinase; domain 1 72 173 - -
Acco11g2461 379 PANTHER OS01G0588500 PROTEIN-RELATED 40 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2461 Acco-ChrAcco11 37689702 37694543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2461 75 370 Glycoside Hydrolase AT3G07070 51.178 1.77e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Acco11g2461 PK_Tyr_Ser-Thr 2.3e-49 CL0016