Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2431 ATGGCGGATTCTCCTCTCAGAAGGACTTCAAGGTCACCGTCCCCATGGAGAGACCAGTCAAGATCGAGATCCAGGTCAAAGACTCCGCCCAGGGCTAGGTCCAGGTCTCGTTCTAGATCAAGATCCTGGTCAAGACACAGGCCGAGGTCCGGTTCAAGAAGCCGAGGCAGATCAAGATCAAGAAGTCATGGAAGGTCTGAAATAGTAAATCCTGGGAATACTCTATATGTTACTGGCCTATCTTCAAGGGTTACTGAGAGGAATCTAGAAGAGCACTTTTCTAAGGAAGGAAAGGTTGCTTCATGTTTCCTGGTGGTGGAGCCTCGTACACGTATTTCCCGCGGTTTTGCTTTTGTTACGATGGATACTGTTGAGGATGCTAACCGCTGTATCAAGTACCTTAATCAATCTGTACTTGAAGGTCGCTATATTACAGTTGAGCAGAATACATTGCATCAGCTATGTTGGCAGCGATCAAAGATGATCAGTTCACCCTTGTCAACTTTAGTGAAACATCTTGATCAATGGCAAGCTTAA 537 0.46 MADSPLRRTSRSPSPWRDQSRSRSRSKTPPRARSRSRSRSRSWSRHRPRSGSRSRGRSRSRSHGRSEIVNPGNTLYVTGLSSRVTERNLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTVEDANRCIKYLNQSVLEGRYITVEQNTLHQLCWQRSKMISSPLSTLVKHLDQWQA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2431 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Acco11g2431 178 SMART rrm1_1 74 147 IPR000504 GO:0003723
Acco11g2431 178 MobiDBLite consensus disorder prediction 26 60 - -
Acco11g2431 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Acco11g2431 178 MobiDBLite consensus disorder prediction 1 17 - -
Acco11g2431 178 Gene3D - 9 152 IPR012677 -
Acco11g2431 178 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 156 - -
Acco11g2431 178 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 60 150 - -
Acco11g2431 178 MobiDBLite consensus disorder prediction 1 73 - -
Acco11g2431 178 SUPERFAMILY RNA-binding domain, RBD 22 147 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2431 Acco-ChrAcco11 37470763 37472485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2431 70 147 Eukaryotic Initiation Factors Gene Family AT3G11400 35.897 3.92e-08 50.1