Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2421 ATGGATGATCGGCACCGCAATTTATTGGCTGCTCCACCACCGGAAATGGAAAAGCCACCCAAGGCCAAAAGCAGTTACCACAAAACTATGTTGATAGGGTCTGTTTGTGGCATTTTATTTTTAACAGTAATGGTAGTTGCATTGTTGTACTGCATCATCAAGAGAAAGGATAATTCACTTAAATGCAGGAGGAGTTCGAAAGGTGCAGAAGATGAAAAGAGTTTGAAATATGATAAAATATCGTTGAGGCGTTTCGATTTGGAGGAACTAGAGAAGTCTACAAATAATTTTAGCCCAGATTGCTTGCTTGGTTCTGGTGCATTTGGAACGGTGTATAAAGGAACCTTTGAATTAGGAGGAACATTAGCCATTAAAAGAGCTCATGGTGAATCATTCTTAAGCAAGGCAGAGTTCATAAATGAAGTGAAGCTCATTTCGAAAGTAAAGCACAGGAATCTTGTTAGTCTGGTGGGATATTGTAAAGAGCCTGGAGATGGGGTTCAAATGCTGGTTTATGAATATGTGCCTAATGGTTCTCTGCTCGAGTACATGATGGGAAAGAGAGGGAAGAGCTTAACTTGGAGGCAAAGAGTAAACATAGCAATAGGAGCAGCTAAAGGTATAGCTTACTTGCATGAAGAAATGAAACCGAGTTTAATTCATCGTGACATCAAACCGAGCAACATCTTAATAGGGGAAAGATTTGAGGCTAAAGTTTCAGATTTTGGGTTGATAAAATCAGGACCAACTGGTGATCAATCTCACGTTAGCAGCCAGATCAAAGGAACCCCAGGGTACCTTGACCCCACTTATTGTTCAACCTTTCATTTGACTACATTCAGTGACGTTTATAGTTTTGGTGTCATACTTCTCCAACTTATTTCTACTAGACCAGCCGTTGATCCCACAAAAAATCAAAATAGTTCTCATATTATTGATTGGGCAAGACCTAGCATAGAGAAGGGTAATATTGAAGAAATCATAGATGCCAATTTACTATGTGAGCCTTGCAATATGAAAGTTATGTTGAAGATGGGTCAGCTTGCCCTTAGATGTGGGGCTCAAGTACCAAAGCATCGTCCTACAATGACTCAAGTGCGCCAAGAGTTAGAAGAGGCTCTCCATGTAGCTGATAACTTGATTGGCAAACTACCTTCAAAGAATTTCAGTAAATCAAGTAACACATCTCAAGAATTAACAGAACCAGAGGCTCTCAAACCCATAGAAAACTATGATTGTTCAGAGAGTTTTGTAAGCATAAATGGTGTTGGATTTCAAAAGTTTCTTATCGATATGGATAGTTTATCCTTTCAAAGTGAAAATTTAAGATGCCTAGAAAATAATAGTATTAGTATTGACACTGATGTCAACACTTTGAGGAGAATTCAAGAAGACGAAGCTATGGAACAGTAG 1413 0.3885 MDDRHRNLLAAPPPEMEKPPKAKSSYHKTMLIGSVCGILFLTVMVVALLYCIIKRKDNSLKCRRSSKGAEDEKSLKYDKISLRRFDLEELEKSTNNFSPDCLLGSGAFGTVYKGTFELGGTLAIKRAHGESFLSKAEFINEVKLISKVKHRNLVSLVGYCKEPGDGVQMLVYEYVPNGSLLEYMMGKRGKSLTWRQRVNIAIGAAKGIAYLHEEMKPSLIHRDIKPSNILIGERFEAKVSDFGLIKSGPTGDQSHVSSQIKGTPGYLDPTYCSTFHLTTFSDVYSFGVILLQLISTRPAVDPTKNQNSSHIIDWARPSIEKGNIEEIIDANLLCEPCNMKVMLKMGQLALRCGAQVPKHRPTMTQVRQELEEALHVADNLIGKLPSKNFSKSSNTSQELTEPEALKPIENYDCSESFVSINGVGFQKFLIDMDSLSFQSENLRCLENNSISIDTDVNTLRRIQEDEAMEQ 470
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2421 470 SMART serkin_6 97 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g2421 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Acco11g2421 470 Pfam Protein tyrosine and serine/threonine kinase 102 370 IPR001245 GO:0004672|GO:0006468
Acco11g2421 470 PANTHER OS01G0750732 PROTEIN 41 391 - -
Acco11g2421 470 CDD STKc_IRAK 103 372 - -
Acco11g2421 470 ProSiteProfiles Protein kinase domain profile. 97 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g2421 470 Gene3D Phosphorylase Kinase; domain 1 67 174 - -
Acco11g2421 470 SUPERFAMILY Protein kinase-like (PK-like) 77 371 IPR011009 -
Acco11g2421 470 Gene3D Transferase(Phosphotransferase) domain 1 175 386 - -
Acco11g2421 470 FunFam Putative LRR receptor-like serine/threonine-protein kinase 65 174 - -
Acco11g2421 470 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 175 378 - -
Acco11g2421 470 MobiDBLite consensus disorder prediction 1 22 - -
Acco11g2421 470 ProSitePatterns Protein kinases ATP-binding region signature. 103 125 IPR017441 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Acco11g2421 Acco-ChrAcco11 37407433 37409477 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2421 32 416 Receptor kinase-like Gene Family AT1G30570 35.714 1.82e-77 256
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Acco11g2421 PK_Tyr_Ser-Thr 9.3e-42 CL0016