LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g2421	ATGGATGATCGGCACCGCAATTTATTGGCTGCTCCACCACCGGAAATGGAAAAGCCACCCAAGGCCAAAAGCAGTTACCACAAAACTATGTTGATAGGGTCTGTTTGTGGCATTTTATTTTTAACAGTAATGGTAGTTGCATTGTTGTACTGCATCATCAAGAGAAAGGATAATTCACTTAAATGCAGGAGGAGTTCGAAAGGTGCAGAAGATGAAAAGAGTTTGAAATATGATAAAATATCGTTGAGGCGTTTCGATTTGGAGGAACTAGAGAAGTCTACAAATAATTTTAGCCCAGATTGCTTGCTTGGTTCTGGTGCATTTGGAACGGTGTATAAAGGAACCTTTGAATTAGGAGGAACATTAGCCATTAAAAGAGCTCATGGTGAATCATTCTTAAGCAAGGCAGAGTTCATAAATGAAGTGAAGCTCATTTCGAAAGTAAAGCACAGGAATCTTGTTAGTCTGGTGGGATATTGTAAAGAGCCTGGAGATGGGGTTCAAATGCTGGTTTATGAATATGTGCCTAATGGTTCTCTGCTCGAGTACATGATGGGAAAGAGAGGGAAGAGCTTAACTTGGAGGCAAAGAGTAAACATAGCAATAGGAGCAGCTAAAGGTATAGCTTACTTGCATGAAGAAATGAAACCGAGTTTAATTCATCGTGACATCAAACCGAGCAACATCTTAATAGGGGAAAGATTTGAGGCTAAAGTTTCAGATTTTGGGTTGATAAAATCAGGACCAACTGGTGATCAATCTCACGTTAGCAGCCAGATCAAAGGAACCCCAGGGTACCTTGACCCCACTTATTGTTCAACCTTTCATTTGACTACATTCAGTGACGTTTATAGTTTTGGTGTCATACTTCTCCAACTTATTTCTACTAGACCAGCCGTTGATCCCACAAAAAATCAAAATAGTTCTCATATTATTGATTGGGCAAGACCTAGCATAGAGAAGGGTAATATTGAAGAAATCATAGATGCCAATTTACTATGTGAGCCTTGCAATATGAAAGTTATGTTGAAGATGGGTCAGCTTGCCCTTAGATGTGGGGCTCAAGTACCAAAGCATCGTCCTACAATGACTCAAGTGCGCCAAGAGTTAGAAGAGGCTCTCCATGTAGCTGATAACTTGATTGGCAAACTACCTTCAAAGAATTTCAGTAAATCAAGTAACACATCTCAAGAATTAACAGAACCAGAGGCTCTCAAACCCATAGAAAACTATGATTGTTCAGAGAGTTTTGTAAGCATAAATGGTGTTGGATTTCAAAAGTTTCTTATCGATATGGATAGTTTATCCTTTCAAAGTGAAAATTTAAGATGCCTAGAAAATAATAGTATTAGTATTGACACTGATGTCAACACTTTGAGGAGAATTCAAGAAGACGAAGCTATGGAACAGTAG	1413	0.3885	MDDRHRNLLAAPPPEMEKPPKAKSSYHKTMLIGSVCGILFLTVMVVALLYCIIKRKDNSLKCRRSSKGAEDEKSLKYDKISLRRFDLEELEKSTNNFSPDCLLGSGAFGTVYKGTFELGGTLAIKRAHGESFLSKAEFINEVKLISKVKHRNLVSLVGYCKEPGDGVQMLVYEYVPNGSLLEYMMGKRGKSLTWRQRVNIAIGAAKGIAYLHEEMKPSLIHRDIKPSNILIGERFEAKVSDFGLIKSGPTGDQSHVSSQIKGTPGYLDPTYCSTFHLTTFSDVYSFGVILLQLISTRPAVDPTKNQNSSHIIDWARPSIEKGNIEEIIDANLLCEPCNMKVMLKMGQLALRCGAQVPKHRPTMTQVRQELEEALHVADNLIGKLPSKNFSKSSNTSQELTEPEALKPIENYDCSESFVSINGVGFQKFLIDMDSLSFQSENLRCLENNSISIDTDVNTLRRIQEDEAMEQ	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g2421	470	SMART	serkin_6	97	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco11g2421	470	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
	Acco11g2421	470	Pfam	Protein tyrosine and serine/threonine kinase	102	370	IPR001245	GO:0004672\|GO:0006468
	Acco11g2421	470	PANTHER	OS01G0750732 PROTEIN	41	391	-	-
	Acco11g2421	470	CDD	STKc_IRAK	103	372	-	-
	Acco11g2421	470	ProSiteProfiles	Protein kinase domain profile.	97	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco11g2421	470	Gene3D	Phosphorylase Kinase; domain 1	67	174	-	-
	Acco11g2421	470	SUPERFAMILY	Protein kinase-like (PK-like)	77	371	IPR011009	-
	Acco11g2421	470	Gene3D	Transferase(Phosphotransferase) domain 1	175	386	-	-
	Acco11g2421	470	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	65	174	-	-
	Acco11g2421	470	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	175	378	-	-
	Acco11g2421	470	MobiDBLite	consensus disorder prediction	1	22	-	-
	Acco11g2421	470	ProSitePatterns	Protein kinases ATP-binding region signature.	103	125	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g2421	Acco-ChrAcco11	37407433	37409477	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g2421	32	416	Receptor kinase-like Gene Family	AT1G30570	35.714	1.82e-77	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Acco11g2421		PK_Tyr_Ser-Thr	9.3e-42	CL0016