Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2396 ATGGCAGCTAAACATGACATAGAGGAAATTTCTTCTGAGAATTCTGTATATTCACCGATGGTAAGCAGATTCAGACTTGTGTTTGACAGATTATGGGCTTTTGCCTCTTCCTGGAAGACAGGCAGCACACCACGTGGTCGAAGAATTTTCCATAGAGACGTCGAAAAAGAAGAATTCCAGCATGCCAATACTCAATGCCTCTCTTCCTACTACAGTGTCTTCGTCGTTCGCCTGGCAATCATGGTCATGTTGGCCATCTTGATTGGGCTGCTCACTATATTAACATGGCATATCACGAAGAGATATACGGCAAAATCACTTGATAACTTAGCATATGGGCTTCGTTTTGAATTACTGCAACGCCCCATCTTACGGATGTGGAATATTTTGAATTCTACGGCTGAAATTACAAGAACTCAGGTTGAGCTGTCTCAGTATGTAATCAGACGATACAGCAACCCTGCCAATCAAGCAGAACAACTGTACGAGGCTATGAAGTCTGTAACCTGGGCCCTGTTCTCTAGCCGCAGGGCACTCAATTCAATAACTATCAATTACAGGAACGGCTTTGTTCAGGCATTCCACAGAGATCTTAAGGATAACAACACATTTTACATCTACTCTGATCTTGCAAACTACTCCATAGGTGCCAGTGTAGCCAATGAGATGAAATCACCCTCAACACATCAAGCTTGGAACGATGAAGCCATTCGTGGTAACATTTCTGCAACTTGGTACCGTGAACCACTTGACCCTCTTAGCGGTGAGAAGATTGGAAAAGCTAAGAAGATTGCACCAGAAGACTTGATTAATATCGCTGGTATTTCTCAAGTCCCTGATGGGGCAGCTTCATGGCATGTTGCTGTGAGCAAGTTCACAGATTCACCTTTGCTTTCTGCTGCGCTGCCAGTTTGGGACTCTTCGAATAAGAGCATTGTGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTTGGCCAGCTAATGAAAGAACTAGTTGAATTTCATAGCGGTTATATCTATTTAACCTCCCTAGAGGGTTACTTACTTGCCACTTCCACAAATGCTCCACTGCTAACATATTCAAAGCCTCTCAAGCTTAAGATGGCTGTTGATTGTGAAGATGATGTCATACGATTGGGAGCCCAGTGGCTGAATAGAACCTATGGGAAGGATTTCCCTCCAAGTCATGGGGTTCATGTAGAGAATGTCAAGCTAGGCAATCAGCAGTATTACATCGACTCATTCTTTTTAAATTTGAAGAGGCTTCCTCTGGTGGGTGTGATCATTATTCCAAGAAAGTATATTATGGGGAAGGTTGATCAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCGTTGTGTATTCTAGTCATTGGATGTGTTTGCATATTAATTCTGACAAATGGGGTGTCAAAGGAAATGAGACTAAGGGCAGAACTGATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAGTTTCTTGCAAACATGAGTCATGAATTGAGGACACCAATGGCAGCAGTGATTGGGTTGCTTGACATTCTTATATCTGATGATTGTCTATCAAATGAACAATATGCAACAGTTACTCAGATAAGAAAATGTTCAACTGCATTACTCCGTCTTCTTAACAACATATTGGATCTCAGCAAGGTGGAATCCGGAAAGTTGGTGTTAGAAAATGCAGAATTTGACTTGGGACGGGAACTTGAAGGCCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAACGTAGAGACTGTCTTGGACCTATCAGGTGATATACCAAAGGTAGTTCAGGGTGATTCTGCTAGGGTTGTTCAAATTTTTGCAAATTTGATCAACAATTCAATTAAGTTCACTCCATCTGGTCACATTATTCTTCGAGGATGGTGCGAAAACCCACATTGTTCCAGTGATAGTCGAAATCTTCCTCTTAATCAGAAGTCCCGAACTCCGCAAAAGACCAGAATGAAGCAACAAGAAAACCAGGCAAAGCAGGCATCTAAAAAAGACAACCAAATAATTCTTTGGTTTGAAGTAGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACCACTAGATTGCACGGAGGCACCGGTCTTGGACTTTGCATTGTGAGAACCTTGGTCAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAAGGTCCAGGAACCCTGATGCGACTGTACCTGCTTCTCAGTACACCCATGAATGCCACAGAACAACATTGTCAAATAGATTATGCGGAGAATGGCTTGGTGGTATTGCTTGCACTACATGGAGACACGGGTCGATCTATCACATCTAAATGGTTACAGAAAAATGGGGTTTGCACTCTAGAGGCATCTGAATGGAATGAACTGACGCAAATTCTGAGGGAACTCTTCCATGCAAGTTCAGTCCACCATAATGGCTTTGATGCACATTATGCAGTAAATAAGAGTTGGAAGTCCAAATTACTCAACATAGAAGAAATGAGGAACCCAACATTTGTCATTATAGTGGACATAGGGCTACTTGATTTGAGCACAGATATATGGAAGGAACAGCTCATCTTCCTTCACAAGTTCTTTGGTAGAGCAAAGTTCGCATGGGTGCTAAATCATGACACCTCTAATACAATAAAGATGGAGCTTCGCAGGAAGGGGCATATATTGATGGTCAACAAGCCCCTCTACAAAACCAAAATGCTTCATATTCTAGAAGCTGTTATAAAGGAGAGAAATCTTGAGCTGCAAAAGAGAAATATGACTACTTCAAGAACCTCAACGAAAGATGGTGATGCACACGAGTTTCTGGAGATTGATTCTACTCATTTTGATGGTGTTAGCTCTGATGGTTCTGACATATCCGAAATGGGTGCTTCTAATAGTTCCAGTGGAGAAAAACGAAGGGAAACAATAGTGAAATCCCATCCGCCATCACAGTACAACAAAAACAACAGCTTCATTGGATTAACCGATGACTATGCAGAAGATAACATTTCAAGGAAAGAAGAATCCTGTAAGAGTAGCCCCAACTGCCGTGACATCCTTGAAGACACAGAACCAAAATCACAAGCATCATCTCCAACAGAAGCTCAAGAAAGAGAATCTGGTTCTGTTGTCACTTGCTCAAGTAAGACTGTCAATGGAAAGAAATCCCTTGAAGGTCTGAGGATATTGCTTGCAGAAGACACTCCAGTACTTCAGAGAGTTGCAACCATAATGTTGGAAAAAATGGGAGCTACAGTTGTTGCAGTAGGTGATGGACAGCAGGCTGTGGATGCTCTGAATTGCATGCTCGGCGCTGAAGATAGTAGAAGGGAGTCTCTAAAGGAGGAGAGAAGCACAATATCTCAAACAGAAATTATCAGTTGTACACCTTATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCGACGAAGGCAATCAGGAAGTCAGAAGCAGAAACTGGCTCGCACATTCCCGTTGTTGCTCTTACAGCCCATGCAATGTCATGTGATGAGGCTAAGTGCCTGGAGGTGGGCATGGATGCTTATCTAACAAAGCCAATTGACTTCAAGCTGATGGTGTCAACCATTCTTTCACTCACTAAAACAACTTCCTGA 3693 0.423 MAAKHDIEEISSENSVYSPMVSRFRLVFDRLWAFASSWKTGSTPRGRRIFHRDVEKEEFQHANTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHITKRYTAKSLDNLAYGLRFELLQRPILRMWNILNSTAEITRTQVELSQYVIRRYSNPANQAEQLYEAMKSVTWALFSSRRALNSITINYRNGFVQAFHRDLKDNNTFYIYSDLANYSIGASVANEMKSPSTHQAWNDEAIRGNISATWYREPLDPLSGEKIGKAKKIAPEDLINIAGISQVPDGAASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEFHSGYIYLTSLEGYLLATSTNAPLLTYSKPLKLKMAVDCEDDVIRLGAQWLNRTYGKDFPPSHGVHVENVKLGNQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGKVDQRAFKTLVILISASLCILVIGCVCILILTNGVSKEMRLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLSNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLENAEFDLGRELEGLVDMFSVQCINHNVETVLDLSGDIPKVVQGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPHCSSDSRNLPLNQKSRTPQKTRMKQQENQAKQASKKDNQIILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLLLSTPMNATEQHCQIDYAENGLVVLLALHGDTGRSITSKWLQKNGVCTLEASEWNELTQILRELFHASSVHHNGFDAHYAVNKSWKSKLLNIEEMRNPTFVIIVDIGLLDLSTDIWKEQLIFLHKFFGRAKFAWVLNHDTSNTIKMELRRKGHILMVNKPLYKTKMLHILEAVIKERNLELQKRNMTTSRTSTKDGDAHEFLEIDSTHFDGVSSDGSDISEMGASNSSSGEKRRETIVKSHPPSQYNKNNSFIGLTDDYAEDNISRKEESCKSSPNCRDILEDTEPKSQASSPTEAQERESGSVVTCSSKTVNGKKSLEGLRILLAEDTPVLQRVATIMLEKMGATVVAVGDGQQAVDALNCMLGAEDSRRESLKEERSTISQTEIISCTPYDLILMDCQMPKMDGYEATKAIRKSEAETGSHIPVVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMVSTILSLTKTTS 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2396 1230 ProSiteProfiles Histidine kinase domain profile. 506 763 IPR005467 -
Acco11g2396 1230 CDD REC_hyHK_CKI1_RcsC-like 1082 1222 - -
Acco11g2396 1230 MobiDBLite consensus disorder prediction 1045 1067 - -
Acco11g2396 1230 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 486 566 IPR036097 GO:0000155|GO:0007165
Acco11g2396 1230 MobiDBLite consensus disorder prediction 969 990 - -
Acco11g2396 1230 Pfam His Kinase A (phospho-acceptor) domain 500 565 IPR003661 GO:0000155|GO:0007165
Acco11g2396 1230 SMART HKATPase_4 612 763 IPR003594 -
Acco11g2396 1230 SMART HisKA_10 499 565 IPR003661 GO:0000155|GO:0007165
Acco11g2396 1230 Pfam Response regulator receiver domain 1082 1221 IPR001789 GO:0000160
Acco11g2396 1230 CDD HisKA 500 561 IPR003661 GO:0000155|GO:0007165
Acco11g2396 1230 PANTHER TWO-COMPONENT HISTIDINE KINASE 62 770 - -
Acco11g2396 1230 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 612 761 IPR003594 -
Acco11g2396 1230 SUPERFAMILY CheY-like 1078 1226 IPR011006 -
Acco11g2396 1230 ProSiteProfiles Response regulatory domain profile. 1081 1226 IPR001789 GO:0000160
Acco11g2396 1230 FunFam Histidine kinase 1-like protein 487 566 - -
Acco11g2396 1230 SMART REC_2 1080 1222 IPR001789 GO:0000160
Acco11g2396 1230 PRINTS Bacterial sensor protein C-terminal signature 688 702 IPR004358 GO:0016310|GO:0016772
Acco11g2396 1230 PRINTS Bacterial sensor protein C-terminal signature 723 741 IPR004358 GO:0016310|GO:0016772
Acco11g2396 1230 PRINTS Bacterial sensor protein C-terminal signature 706 716 IPR004358 GO:0016310|GO:0016772
Acco11g2396 1230 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 554 759 IPR036890 -
Acco11g2396 1230 Gene3D - 1064 1228 - -
Acco11g2396 1230 Gene3D - 487 566 - -
Acco11g2396 1230 MobiDBLite consensus disorder prediction 1025 1044 - -
Acco11g2396 1230 MobiDBLite consensus disorder prediction 967 1012 - -
Acco11g2396 1230 Gene3D - 567 764 IPR036890 -
Acco11g2396 1230 MobiDBLite consensus disorder prediction 1025 1067 - -
Acco11g2396 1230 MobiDBLite consensus disorder prediction 649 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2396 Acco-ChrAcco11 37254132 37260538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2396 10 1230 Histidine Kinase Gene Family AT2G17820 64.096 0.0 1560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco11g2396 HATPase_c 3.2e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2396 11 37254132 37260538 Acco11g2396 11 37254132 37260538 ECH