Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2388 ATGAGGCCTCTGTTATATTTCTTCTTCCATCATATTCTGACTTCCGATAGTGAGTCAACCTCATTTCAATACATGGAGATCATGCATGACCTTGACCAAGCAGCCGCAAAGCTTCTTTTGTCTCCCAGAATTGTGGAAGGTTCAACATGGCATAATTTACACTCAATAAGCCAAAGCATCAATATCATTACTCAGGGTTCGACCATAATGGCGGAGGAGAGATCAACTGGTTTGGTTCAGTGGTTCAGCGATTCGAAAGGGTTTGGTTTTATCAAGCCCGACGATGGAGGAGAAGATCTCTTCGTTCATCAATCTTCCATCAGATCCGAAGGATATCGTAGTCTTGTAGAAGGCGATCGGGTCGAGTTCGTGATTGCCTCCGGTGACAACGACAGAACTAAAGCCATCGATGTTACTGGCCCCAATGGAACTCCTCTACAATCCAAAAAAGATAATGACGGTGGTCGCGATGGGGGCTATGGTTTTAGCGGTGGATGGAGAGGTGGGGATAGGCGTAATAGCGGAGGAGCTAGCGGTGGTGGCTGCTATCAGTGCGGCGATATCGGCCACTTAGCCAGAGATTGCAACCGGGGCAACAGTGCGGGTGGCCCTTCTTGTTTTAAATGCGGTGAAGTCGGGCACTTGGCTAGGGACTGTTCACTTAGAAATAATGGCGGCGGCGGGGCTTGCTTTAGGTGTCATGAGTATGGGCACATGGCGAGGGACTGCACCAAGGGAGGCGGTGGGGGCGGTGGGGGTTGCTTCTCATGTGGTGAAGTCGGTCACTTGGCCAGGGACTGCAACAAAGACAGCGGAAGGTACGGCGGCGGAGGCGGAGGACATGCATGCTATAATTGTGGGAGGAGTGGGCATTTTGCGCGAGAGTGTCCTGATGCCTCTGCATGA 906 0.5132 MRPLLYFFFHHILTSDSESTSFQYMEIMHDLDQAAAKLLLSPRIVEGSTWHNLHSISQSINIITQGSTIMAEERSTGLVQWFSDSKGFGFIKPDDGGEDLFVHQSSIRSEGYRSLVEGDRVEFVIASGDNDRTKAIDVTGPNGTPLQSKKDNDGGRDGGYGFSGGWRGGDRRNSGGASGGGCYQCGDIGHLARDCNRGNSAGGPSCFKCGEVGHLARDCSLRNNGGGGACFRCHEYGHMARDCTKGGGGGGGGCFSCGEVGHLARDCNKDSGRYGGGGGGHACYNCGRSGHFARECPDASA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2388 301 Gene3D - 202 225 - -
Acco11g2388 301 Gene3D - 279 301 - -
Acco11g2388 301 Gene3D - 226 250 - -
Acco11g2388 301 Gene3D - 251 275 - -
Acco11g2388 301 SUPERFAMILY Retrovirus zinc finger-like domains 222 270 IPR036875 GO:0003676|GO:0008270
Acco11g2388 301 Pfam Zinc knuckle 282 297 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 Pfam Zinc knuckle 205 220 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 Pfam Zinc knuckle 181 195 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 Pfam Zinc knuckle 229 245 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 Pfam Zinc knuckle 253 268 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 ProSitePatterns Cold-shock (CSD) domain signature. 88 107 IPR019844 -
Acco11g2388 301 SUPERFAMILY Retrovirus zinc finger-like domains 272 298 IPR036875 GO:0003676|GO:0008270
Acco11g2388 301 SMART c2hcfinal6 253 269 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 SMART c2hcfinal6 205 221 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 SMART c2hcfinal6 282 298 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 SMART c2hcfinal6 229 245 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 Pfam 'Cold-shock' DNA-binding domain 76 140 IPR002059 GO:0003676
Acco11g2388 301 ProSiteProfiles Zinc finger CCHC-type profile. 254 267 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 PANTHER COLD SHOCK DOMAIN PROTEIN 2 246 298 - -
Acco11g2388 301 SMART csp_8 76 141 IPR011129 GO:0003676
Acco11g2388 301 ProSiteProfiles Zinc finger CCHC-type profile. 206 219 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 ProSiteProfiles Zinc finger CCHC-type profile. 283 298 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 ProSiteProfiles Cold-shock (CSD) domain profile. 74 140 IPR002059 GO:0003676
Acco11g2388 301 SUPERFAMILY Retrovirus zinc finger-like domains 175 222 IPR036875 GO:0003676|GO:0008270
Acco11g2388 301 Gene3D - 69 152 IPR012340 -
Acco11g2388 301 Gene3D - 158 201 - -
Acco11g2388 301 ProSiteProfiles Zinc finger CCHC-type profile. 182 195 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 MobiDBLite consensus disorder prediction 134 167 - -
Acco11g2388 301 SUPERFAMILY Nucleic acid-binding proteins 70 140 IPR012340 -
Acco11g2388 301 CDD CSP_CDS 76 140 IPR002059 GO:0003676
Acco11g2388 301 ProSiteProfiles Zinc finger CCHC-type profile. 230 245 IPR001878 GO:0003676|GO:0008270
Acco11g2388 301 PRINTS Cold shock protein signature 113 131 IPR002059 GO:0003676
Acco11g2388 301 PRINTS Cold shock protein signature 77 92 IPR002059 GO:0003676
Acco11g2388 301 PRINTS Cold shock protein signature 98 107 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2388 Acco-ChrAcco11 37172364 37175253 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Acco11g2388 CSD 1e-23 CL0021