Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2362 ATGCAAACTAGGCAGACTAAGAAGATACCGCCGACGAGGAAATCGACATCGAAAAGCCCGGCGAACGCTCAATCCCCCCAGACCAACCGCACCTCTACGATCAAAACTAGGCAGGCTAAGAAGAACGAGGCCTCACACTTACAAAATACAAGCTTCAATGAGGAACCGGAGCAATCATCCGAGGAGGCAAAGGCAGCAGCTGATGCTTCTCTGGTGATGCCAGAGACGAAAGTTGTTACAGCTGCAAAGTCAACACCAAAGAGGACGCCTAAGAGAGCTGTGGGAAGACCTAGGAGTTCAACTAAAGCCGTTACTGCCCGACAACAAGAAGAACAAGTGGAGGCAATAACTGATGAAACACCGAAAGTGGATAATATTGAAGTAGCTAAGAAATCGGAGGAGCCTCTGAATGTTGAGGTAGTCAAAGCAGATAAAATTGAGAGTAAAGAAGTGGGGGAACAAAGTGTTGAGTTTGTTAGACAATCTGCAGAGAATGAACCACATCCCAAGGAAAGGGATGAGTGTGATGCTGATAGAGCCAGTGAATTAGCTGAAAAGAAAAGAGACATAGTTGAAGCTGCCTCCCAAGGTGTCCCCATTTTGTTGAATCAAGAAGAACCTAGTATTGCGGAGCTCTCTAAATTTCTGGAGAATGAAGAACTCACTGGTACAAAAGAAGGAGAGCAAACAAATGAAGAGGAATGCAAAAAAGAATCAGAAAAATCAACGAAAGAACAGACAACTAATATTGGACATAAAGAGGAATTTAATGCTGATTCTGTCAGTATGGAAATGAAAGACCATAGGGAGCAAGTGATGAAGGTGGATGGAGAAAAAGAATCAGACAAATCAATGGAAAAGGAGCGAGAAAAAGCATTAGAAAAATATATGCAAGGGGAGACAAGCAATATTATACATAACCAGGAATCTAATACTGATTCTGTTGAGAAGGAAATGACAAACCAATTTCTGCAAGATGATGTTAAACCTGAAAAGGAGAATCCAAGTGGTGATCAAGGCGCTGAAGGCTGTGGTGAAATGTTGGGTCGTGAAAAACAAGGAGGGGAGGAGTTTGTTGAGGTTGATGCAGAGGAGCCTCTTGAAGAAGCTGAGACATTGGATGAGGAACGCAAGGAATTGTCAACTATGGCGAAGGAGCGCAAGATTAAGAAAGAGAATGAAATATTTGTTGGTGGGCTTGATCGTGATGCTACGGAGGAGGATCTTAAAAAGGTTTTTGAGAAGATTGGGGAGATAGTTGACATTAGGTTGCATAAAAATTCTTCAACAAATAAAAATAAGGGCTATGCATTCGTAAAATTTTCTTGTAAGGAACATGCAAAGAAAGCTTTGTCAGAGATGAAAAACCCTGTTATACGTGGTAAGCGATGTGGCACTGCACCCAGTGAGGATAATGACACATTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAGGATTATGGTGTTGAGGATGTTGAAAACATTACACTTGTCCCAGATGTTCATCATGAAGGATTAAGCCGGGGCTTTGCGTTCATTGAGTTCTCCTGTCACCATGATGCCATGCTTGCCTATAAGAGGCTTCAAAAGCCTGATGTAATCTTTGGACATGCTGAGCGAACTGTCAAAGTAGCCTTTGCCGAACCTGCACGAGAGCTGGATCCAGAGATTATGGCAGAGGTGAGGTCTGTTTTTGTTGATGGTCTCCCTCCACATTGGGATGAAGGCTGCATTAGGGAGCACTTCAAAGGTTATGGTGAAATTGTACGAATTGTACTTGCCCGGAACATGACTACTGCTAAGAGGAAAGATTTTGGATTTGTTGATTTCTCTACACATGAAGCCGCTGTAGCTTGTGTTGATGGTGTAAATAGTTCAGAATTTGTTGAAGGAACACAAAAGACTAAGGTGAGAGCTAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGAGGCATGTGTGGTGGGTTCCGGATTGGTCATGCTCGTGGTGGAGCCTTTCCAAGATCTGGAAGGGGTTTTACTCGCGGAGGACATGCTGCCAACTGGGGAAATTTTAATAGGGATCGGAATTTTAATCTTGGAGGACACGGTCAAATTGGAAGAATGGGTTTCAGGAATGATCTTAATCTTAATAATGCTTATCCAGATTTTCATCAGAGGCAATTTGGGGAAAGGATGATTCCTTCGAGGGGTGGACATTATGTAGGTACACAAGGTGCTGCAGTTGCTGGACCATCTAGGCCTTATTTTGATAGAGCATGGTATGGTACCCCTGAGAGACGCCCTGGTGAACCTATTCCCCCAAGGATGCCATTCTCCCCTGAAGGACAATTTGATAGGCCTTTTATGGGAAGGCATATGGATGATCCATATCTTTATGAAGACAGTGTGCATGGGATGAAACGACCATTTCATGTGACTGGCCCGGATCCTAATTACATGGGTCCTGCTAGACTTCGTCCTCGACTGGATTATACAGATCCTGCTGTATTTCCTGCCAATCGTTACCATGATTCTATTCCAGCTGGCAGGGAACAGTACTCACATGACTATCATGGTGCTGATTATGGTGGAGGTCCATATTCATCTTTTTATGGGGGTGACAACTCATATGGGCGAAGATTCTACTACTAG 2670 0.4326 MQTRQTKKIPPTRKSTSKSPANAQSPQTNRTSTIKTRQAKKNEASHLQNTSFNEEPEQSSEEAKAAADASLVMPETKVVTAAKSTPKRTPKRAVGRPRSSTKAVTARQQEEQVEAITDETPKVDNIEVAKKSEEPLNVEVVKADKIESKEVGEQSVEFVRQSAENEPHPKERDECDADRASELAEKKRDIVEAASQGVPILLNQEEPSIAELSKFLENEELTGTKEGEQTNEEECKKESEKSTKEQTTNIGHKEEFNADSVSMEMKDHREQVMKVDGEKESDKSMEKEREKALEKYMQGETSNIIHNQESNTDSVEKEMTNQFLQDDVKPEKENPSGDQGAEGCGEMLGREKQGGEEFVEVDAEEPLEEAETLDEERKELSTMAKERKIKKENEIFVGGLDRDATEEDLKKVFEKIGEIVDIRLHKNSSTNKNKGYAFVKFSCKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEDVENITLVPDVHHEGLSRGFAFIEFSCHHDAMLAYKRLQKPDVIFGHAERTVKVAFAEPARELDPEIMAEVRSVFVDGLPPHWDEGCIREHFKGYGEIVRIVLARNMTTAKRKDFGFVDFSTHEAAVACVDGVNSSEFVEGTQKTKVRARLSNPLPKTQAVKGGMCGGFRIGHARGGAFPRSGRGFTRGGHAANWGNFNRDRNFNLGGHGQIGRMGFRNDLNLNNAYPDFHQRQFGERMIPSRGGHYVGTQGAAVAGPSRPYFDRAWYGTPERRPGEPIPPRMPFSPEGQFDRPFMGRHMDDPYLYEDSVHGMKRPFHVTGPDPNYMGPARLRPRLDYTDPAVFPANRYHDSIPAGREQYSHDYHGADYGGGPYSSFYGGDNSYGRRFYY 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2362 889 SUPERFAMILY RNA-binding domain, RBD 390 464 IPR035979 GO:0003676
Acco11g2362 889 CDD RRM_SF 573 637 - -
Acco11g2362 889 MobiDBLite consensus disorder prediction 218 296 - -
Acco11g2362 889 MobiDBLite consensus disorder prediction 217 378 - -
Acco11g2362 889 MobiDBLite consensus disorder prediction 300 319 - -
Acco11g2362 889 FunFam Heterogeneous nuclear ribonucleoprotein Q 473 557 - -
Acco11g2362 889 CDD RRM_SF 395 464 - -
Acco11g2362 889 MobiDBLite consensus disorder prediction 320 336 - -
Acco11g2362 889 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 573 637 IPR000504 GO:0003723
Acco11g2362 889 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 395 463 IPR000504 GO:0003723
Acco11g2362 889 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 543 IPR000504 GO:0003723
Acco11g2362 889 FunFam Heterogeneous nuclear ribonucleoprotein Q 558 708 - -
Acco11g2362 889 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 473 558 IPR000504 GO:0003723
Acco11g2362 889 SUPERFAMILY RNA-binding domain, RBD 471 638 IPR035979 GO:0003676
Acco11g2362 889 SMART rrm1_1 572 647 IPR000504 GO:0003723
Acco11g2362 889 SMART rrm1_1 474 554 IPR000504 GO:0003723
Acco11g2362 889 SMART rrm1_1 394 467 IPR000504 GO:0003723
Acco11g2362 889 Coils Coil 373 393 - -
Acco11g2362 889 Gene3D - 472 557 IPR012677 -
Acco11g2362 889 Gene3D - 560 704 IPR012677 -
Acco11g2362 889 Gene3D - 361 471 IPR012677 -
Acco11g2362 889 MobiDBLite consensus disorder prediction 1 119 - -
Acco11g2362 889 MobiDBLite consensus disorder prediction 163 182 - -
Acco11g2362 889 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 571 653 IPR000504 GO:0003723
Acco11g2362 889 MobiDBLite consensus disorder prediction 151 182 - -
Acco11g2362 889 CDD RRM_SF 475 553 - -
Acco11g2362 889 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 224 888 - -
Acco11g2362 889 MobiDBLite consensus disorder prediction 1 35 - -
Acco11g2362 889 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 393 471 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2362 Acco-ChrAcco11 36999540 37004156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2362 395 637 Eukaryotic Initiation Factors Gene Family AT2G23350 23.904 1.12e-14 76.3