Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2360 ATGTATCGAACTGTAACAGAAGAAGAGCTTATCATTTCACAAGGCATCGTTGTGCACTCTGCTCCTATACTGCTATTCCGACTCTCTCTCTATTTCTGTGATCCTGTTTCGATGTCGTCCGCCAGAGAAGGTGATCTCACTACTGTCGATCAGTCCACAGAAAAGCCTAAGCCAGTGACCAAGGAGAAGAAGCCCAAGGTTCCAAAGGAGAAGAAGCCCAAGCAGGCGAAAACAGTTTCTCATCCTCCATATTTTCAGATGATCAGGGAAGCTTTATTAGCACTGAACGAGAAGGGTGGCTCCAGCCCCTACGCCATAGCCAAATACATGGAGGATAAGCACAAGGCGGTTCTTCCTGCGAATTTCAGGAAGATCTTGGCCCTTCAGTTGAAGAACCAGGCTGCGAGAGGGAAGCTCATCAAGATCAAGGCCTCCTACAAGCTATCCTCTGAGACCGGCAAGAAGGACGGGGACACCACCGGCATGGTCACCAGGTCCACCTCACAGAAGGCTCAGCGATCTAAGCGAAGCGCGGCTAAGAAGTCAGAGACAGGCAAGAAGGTTAGGAAGGCAGTGAGGAAAGTGGTTGGGGTGAAGAAGACGAAGAAATCAGCCGCACCTGCGAAGCCGAAGCAGCCCAAGTCTCTGAAAACTCCCTCTAAGAGGGCCAGAAGAGTTACTGCATCAGCTTCATGA 696 0.5057 MYRTVTEEELIISQGIVVHSAPILLFRLSLYFCDPVSMSSAREGDLTTVDQSTEKPKPVTKEKKPKVPKEKKPKQAKTVSHPPYFQMIREALLALNEKGGSSPYAIAKYMEDKHKAVLPANFRKILALQLKNQAARGKLIKIKASYKLSSETGKKDGDTTGMVTRSTSQKAQRSKRSAAKKSETGKKVRKAVRKVVGVKKTKKSAAPAKPKQPKSLKTPSKRARRVTASAS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2360 231 Pfam linker histone H1 and H5 family 81 147 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco11g2360 231 SMART h15plus2 78 145 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco11g2360 231 MobiDBLite consensus disorder prediction 43 80 - -
Acco11g2360 231 MobiDBLite consensus disorder prediction 155 173 - -
Acco11g2360 231 MobiDBLite consensus disorder prediction 186 207 - -
Acco11g2360 231 SUPERFAMILY "Winged helix" DNA-binding domain 77 156 IPR036390 -
Acco11g2360 231 PRINTS Histone H5 signature 170 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Acco11g2360 231 PRINTS Histone H5 signature 67 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Acco11g2360 231 PRINTS Histone H5 signature 94 111 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Acco11g2360 231 PRINTS Histone H5 signature 202 219 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Acco11g2360 231 CDD H15 78 149 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco11g2360 231 MobiDBLite consensus disorder prediction 150 231 - -
Acco11g2360 231 Gene3D - 75 156 IPR036388 -
Acco11g2360 231 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 80 150 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco11g2360 231 PANTHER HISTONE H1 54 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2360 Acco-ChrAcco11 36994311 36997565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2360 67 157 Single Myb Histone (SMH) Gene Family AT1G72740 38.462 1.10e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2360 11 36994311 36997565 Acco11g2360 11 36994311 36997565 ECH