Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2358 ATGATGGAAGCGATGGAGTCATGTGTCCCACCGGGCTTTCGCTTCCACCCAACAGATGAAGAGCTCGTTGGTTACTATCTCAGGAAGAAAGTCGCTTCTCAGAAGATAGATCTTGATGTCATCAGAGAGATCGATCTATATCGCATTGAACCATGGGATCTCCAAGAAAGATGCAGGATCGGGTATGAGGAACAAAACGAATGGTATTTCTTCAGCCACAAAGATAAGAAGTATCCGACGGGGACGAGGACCAACAGAGCCACCGTGGCTGGGTTCTGGAAGGCGACAGGAAGAGACAAGGCAGTGTACGACAAAGCAAAGCTCATGGGAATGCGGAAGACCCTTGTTTTCTACAAAGGGAGAGCCCCTAATGGCCAGAAAACTGACTGGATCATGCATGAGTATAGGCTTGAATCTGATGAAAATGCACCCCCTCAGGAAGAAGGATGGGTTGTATGCAGAGCCTTCAAGAAAAAAAGCACTGGCCAAACGAAGACAATAGAAGGATGGGATTCGGGTTACTTTTATGAGGAGACAAGTGGAATGGACTACGTAGCAAGGCAGGCTCATCATCATCAGAGTTTCATAGCTCCAAGTTTTTTGTGTAAGAAGGAGATAGAAGCAGCTGATCATAATAACTTGAGCTTCATGCACTCATCATCAGATCAGTTCGTACAGCTTCCTCAGCTAGAAAGTCCATCTCTGCCATTAATAAAGAGGCCTAGCTCAGCACTAGCGTCTTTAATATCACACAATAATAATAATAATAACGTATTAGGAGAAGATGACCAAAACAACAGGCTGGTCAACAACACCACCACCACCAAAAGGGTGACTACTGATTGGAGGGCTCTTGACAAATTTGTGGCATCTCAATTGAGTCAAGAAGAAGAGAGGGTTTATGAGAGTAGTGATAATAATGGAGTGTCAGGCTTGGAAACGCACGAAGCATTGCTGCTATTGCAGAGTGGTAGCGATGAAGAAGGCAACAAGTTCATGAGCCCATTTTTAAATGGAAGCTCTGACTGTGACATTGGGATATGCGTGTTTGATAAATGA 1059 0.4466 MMEAMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAVYDKAKLMGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENAPPQEEGWVVCRAFKKKSTGQTKTIEGWDSGYFYEETSGMDYVARQAHHHQSFIAPSFLCKKEIEAADHNNLSFMHSSSDQFVQLPQLESPSLPLIKRPSSALASLISHNNNNNNVLGEDDQNNRLVNNTTTTKRVTTDWRALDKFVASQLSQEEERVYESSDNNGVSGLETHEALLLLQSGSDEEGNKFMSPFLNGSSDCDIGICVFDK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2358 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 261 - -
Acco11g2358 352 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Acco11g2358 352 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Acco11g2358 352 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Acco11g2358 352 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Acco11g2358 352 FunFam NAC domain-containing protein 18 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2358 Acco-ChrAcco11 36975083 36977276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2358 2 351 NAC Transcription Factor Family AT2G18060 61.804 5.79e-159 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco11g2358 NAM 5.5e-38 No_clan