Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2357 ATGCCTTCTCTTTTCTTTCTGCTGGTTCTCTGCGCACCGTTCCTAACTTGCGCCGAGCGGAGCAGTGTCGCCATTGCTGAGATCGGAGCCCTCACGTCCTTCAGACTCAACCTTCAGGATCCTCTCGGTGCTCTCGACGGCTGGGATCCTTCCTCACCGGCCGCTCCTTGCGACTGGCGCGGAGTTGCTTGTTACAATAACAGGGTCACTGAGTTGCGCTTGCCTCGGCTTCAGCTCAGTGGCCGGCTCACTGGCCGTCTTTCCGACCTGCGCTTGTTGCGGAAGCTGAGCCTTCGCTCTAACTCCTTCAACGGGACCATTCCTTCGTCGCTTGGTAAATGTGGCTTCCTGCGCGCCGTGTTTCTGCAGTACAACTCACTCTCCGGTTCTCTTCCGCCGGAGATCCGAAACCTCACCGGTATTCAGATTCTTAATGTCGCCCAGAACCATCTCTCCGGCAGAATCCCCGGCGACCTCCCGTTGAGCCTGAAGTACGTCGACCTCTCGTCGAACTCCTTTTCTGGAGAGATTCCGAGTGCCTTTGCCAACCTTTCCCAGCTTCAGCTAATCAACTTGTCTTACAACCAGTTCTCGGGGGAGATTCCGGCGAGCTTTGGACAGCTTCAGCAGCTCGAATACCTCTGGCTTGATCACAATCTTCTCGGAGGAACTCTTCCTTCGGCGCTCGCTAACTGCTCTTCCCTCGTGCATCTGAGCGTAGAAGGAAATGCACTTGGAGGAGTGATTCCGGCGGCCATTGCAGCTCTTCCGAGGCTTCAGGTGATATCTCTCTCTCATAATAATCTTACCGGATCGATCCCGGCTTCCATTTTCTGCAACATTTCGGTCTACACGCCGTCGCTTCGAATTGTTCAGTTAGGATTTAATGGTTTCACGGATATTGTCGAGCCTCAGGCATCAACGCGTTTCAGTGTTCTTCAGGTTTTGGATATTCAGCACAACAACATACACGGCACGTTTCCCTTGTGGATAACGAACATGTCCACGTTAACAATGCTTGATGTTTCAAGTAATGCATTTTCTGGCGAGATTCCATCAGAAATTGGAAGCCTCGCAAAATTGGAGGAGTTAAGGATGGCCAACAATTCATTTACTGGGATAATTCCAGAGGAAATCAAGAAATGTTCCTTCCTGCGTGTTATTGATTTTGAAGGCAACCGGTTTACCGGAGAAGTTCCTTCGTTTTTTGGTTACATGTCAGGCCTGAAGATGTTGTCCCTTGGTGGGAATCTTTTCTCTGGTCCTGTCCCGGAGAGTTTTGGTAACCTTTCGGCGCTGGAAACCCTGAGTTTGAGAGGTAATAACCTGAATGGAACCATGCCTGAGGAAGTCATGGGATTGAGCAATATTTCAAGTTTTGATCTTAGCGGGAATAAGTTTACGGGTAAAATGTCTTCAAGTATTGGGAACCTGAGTCGATTAATGGTTCTCAATCTGAGTGGCAACGGCTTTTCTGGAAAAGTCCCTGCTAGTTTGGGGAATCTTTTCAGGCTAACTACACTTGACTTGAGCAAACAAAATCTTTCAGGAGAGTTACCATCTGAGCTCTCTGGTTTGCCGAATCTGCAAGTTATTGCATTGCAGGAGAACAGATTATCTGGGGACGTTCCTGAAGGGTTTAGCAGTTTGACGAGTCTGCGATATGTGAACCTGAGCTCTAACGCGTTTTCGGGACATATTCCTCAAAATTATGGCTTTCTTCGATCACTGGTTGCTCTTTCTTTGTCTGACAATCACATTACAGGAATAATTCCTCCAGAGATCGGAAACTGCTCTGATATTGAGATTATTGAGCTTGGCTCAAATTCTTTGACAGGTCACATTCCCACTGATCTCACTCGACTCGCCCAATTGAGAGAGCTTGATTTGAGCAGAAACAGTTTAACTGGAGATATACCCGGCGACATCTCCAAATGTCCGTCCTTAAATGCTCTGCTGCTGGTACACAACCATCTTTCAGGCACTATACCGGAGTCACTGTCTGAGCTATCAAACCTGACAATGCTAGATCTCTCTGCTAACAACTTGAGTGGGGAAATATCAAGTAATATTTCCATGATGCCTAATTTAGTGTCCTTCAATGTCTCGGGAAATAACCTGGAAGGTGAGATACCGCCAACCTTGGGTGCTCGGTTCAACAATGCCTCTGCATTTGCGGATAATCAGAACTTATGTGGGAAGCCATTGGATAGGAAGTGTGAAAATGTGGTTGATAGGGACAAGAAGAGGTTGATTGTGTTGATTGTTGTAATTGCTACCGGAGCTTGCTTACTATCATTGTGTTGCTGCTTCTACATATACAGCCTTCTCCGGTGGCGTAAAAGGATCAAGGAAGCGGCATCTGGGGAGAAAAAAAGGAGTCCTGCTAGGGCAAGTTCTGGAGCAAGTGGAGGTCGAGGCAGCACTGATAATGGTGGACCAAAAATGGTCATGTTCAATACCAAAATCACACTTGCTGAAACCATTGAAGCAACTAGACAGTTTGACGAAGAGAATGTGCTGAGCAGAACAAGGTATGGATTGGTATTCAAGGCCTGCTACAACGACGGAATGGTGCTTTCAATTCGCAGACTCCAAGATGGATCTCTGGACGAAAACATGTTCAGGAAAGAAGCTGAATCACTAGGGAAAGTGAAGCACCGAAACTTAACCGTTCTTAGAGGTTACTACGCCGGACCACCTAACATGAGGCTTCTGGTCTACGATTACATGCCTAATGGAAACCTCGCAACCCTCCTCCAAGAAGCTTCTCATCAAGATGGCCATGTTCTGAATTGGCCAATGCGTCACCTCATTGCACTTGGAATTGCTCGTGGCTTAGCTTTCCTACATCAATCCTCAATGGTTCATGGGGACGTGAAACCGCAAAGTGTCCTGTTCGATGCCGATTTCGAAGCTCATTTGTCAGATTTTGGGCTCGACCGTCTTACAGTAGCCACCCCCGGTGAACCCTCCACTTCAACCTCAGTTGGCACACTGGGATACATATCACCCGAAGCTATATTAACAGGGGAAGCCACGAAAGAGTCTGATGTGTACAGCTTTGGCATAGTGTTGCTGGAGCTTCTTACAGGGAAACGACCGGTGATGTTCACACAGGACGAAGATATAGTAAAATGGGTGAAGAAACAACTACAAAGGGGTCAAATCACAGAGTTGTTGGAGCCTGGATTGCTTGAGCTCGATCCAGAATCATCTGAATGGGAAGAGTTCTTGCTCGGTGTGAAAGTGGGCTTGCTCTGCACAGCACCGGACCCTCTCGATCGACCAACCATGTCCGACATAGTGTTCATGCTTGAAGGGTGCCGCGTCGGACCCGACATCCCGTCCTCCGCCGATCCCACCTCTCAACCTTCGCCGGCTTGA 3387 0.483 MPSLFFLLVLCAPFLTCAERSSVAIAEIGALTSFRLNLQDPLGALDGWDPSSPAAPCDWRGVACYNNRVTELRLPRLQLSGRLTGRLSDLRLLRKLSLRSNSFNGTIPSSLGKCGFLRAVFLQYNSLSGSLPPEIRNLTGIQILNVAQNHLSGRIPGDLPLSLKYVDLSSNSFSGEIPSAFANLSQLQLINLSYNQFSGEIPASFGQLQQLEYLWLDHNLLGGTLPSALANCSSLVHLSVEGNALGGVIPAAIAALPRLQVISLSHNNLTGSIPASIFCNISVYTPSLRIVQLGFNGFTDIVEPQASTRFSVLQVLDIQHNNIHGTFPLWITNMSTLTMLDVSSNAFSGEIPSEIGSLAKLEELRMANNSFTGIIPEEIKKCSFLRVIDFEGNRFTGEVPSFFGYMSGLKMLSLGGNLFSGPVPESFGNLSALETLSLRGNNLNGTMPEEVMGLSNISSFDLSGNKFTGKMSSSIGNLSRLMVLNLSGNGFSGKVPASLGNLFRLTTLDLSKQNLSGELPSELSGLPNLQVIALQENRLSGDVPEGFSSLTSLRYVNLSSNAFSGHIPQNYGFLRSLVALSLSDNHITGIIPPEIGNCSDIEIIELGSNSLTGHIPTDLTRLAQLRELDLSRNSLTGDIPGDISKCPSLNALLLVHNHLSGTIPESLSELSNLTMLDLSANNLSGEISSNISMMPNLVSFNVSGNNLEGEIPPTLGARFNNASAFADNQNLCGKPLDRKCENVVDRDKKRLIVLIVVIATGACLLSLCCCFYIYSLLRWRKRIKEAASGEKKRSPARASSGASGGRGSTDNGGPKMVMFNTKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLQDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGPPNMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSMVHGDVKPQSVLFDADFEAHLSDFGLDRLTVATPGEPSTSTSVGTLGYISPEAILTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2357 1128 Pfam Protein kinase domain 845 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g2357 1128 Gene3D Transferase(Phosphotransferase) domain 1 911 1114 - -
Acco11g2357 1128 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 183 - -
Acco11g2357 1128 FunFam Leucine-rich repeat receptor-like protein kinase TDR 514 742 - -
Acco11g2357 1128 Gene3D Ribonuclease Inhibitor 26 159 IPR032675 -
Acco11g2357 1128 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Acco11g2357 1128 SUPERFAMILY Protein kinase-like (PK-like) 814 1116 IPR011009 -
Acco11g2357 1128 ProSiteProfiles Protein kinase domain profile. 835 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g2357 1128 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 911 1114 - -
Acco11g2357 1128 FunFam Putative LRR receptor-like serine/threonine-protein kinase 798 910 - -
Acco11g2357 1128 MobiDBLite consensus disorder prediction 788 815 - -
Acco11g2357 1128 PRINTS Leucine-rich repeat signature 625 638 - -
Acco11g2357 1128 PRINTS Leucine-rich repeat signature 670 683 - -
Acco11g2357 1128 Gene3D Ribonuclease Inhibitor 453 743 IPR032675 -
Acco11g2357 1128 Gene3D Ribonuclease Inhibitor 351 452 IPR032675 -
Acco11g2357 1128 Gene3D Ribonuclease Inhibitor 249 350 IPR032675 -
Acco11g2357 1128 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515
Acco11g2357 1128 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Acco11g2357 1128 Pfam Leucine rich repeat 162 221 IPR001611 GO:0005515
Acco11g2357 1128 Pfam Leucine rich repeat 286 346 IPR001611 GO:0005515
Acco11g2357 1128 Pfam Leucine rich repeat 575 635 IPR001611 GO:0005515
Acco11g2357 1128 SMART LRR_typ_2 574 598 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 90 114 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 358 381 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 550 572 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 430 454 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 406 429 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 526 549 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 256 280 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 694 718 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 478 502 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 622 646 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 184 207 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 670 693 IPR003591 -
Acco11g2357 1128 SMART LRR_typ_2 208 232 IPR003591 -
Acco11g2357 1128 SUPERFAMILY L domain-like 31 301 - -
Acco11g2357 1128 FunFam Uncharacterized protein 256 472 - -
Acco11g2357 1128 Gene3D Ribonuclease Inhibitor 160 248 IPR032675 -
Acco11g2357 1128 SUPERFAMILY RNI-like 248 539 - -
Acco11g2357 1128 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 347 1106 - -
Acco11g2357 1128 SUPERFAMILY L domain-like 474 735 - -
Acco11g2357 1128 SMART LRR_sd22_2 670 693 - -
Acco11g2357 1128 SMART LRR_sd22_2 208 234 - -
Acco11g2357 1128 SMART LRR_sd22_2 454 480 - -
Acco11g2357 1128 SMART LRR_sd22_2 406 432 - -
Acco11g2357 1128 SMART LRR_sd22_2 256 283 - -
Acco11g2357 1128 Gene3D Phosphorylase Kinase; domain 1 809 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2357 Acco-ChrAcco11 36954156 36957542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2357 3 1128 Receptor kinase-like Gene Family AT4G36180 69.798 0.0 1527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Acco11g2357 Pkinase 2.1e-33 CL0016