Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2353 ATGCGAACGCTTTGCGACGCTTGTGAGCGCGCTGCCGCCATCGTTTTCTGCGCCGCCGATGAGGCCGCGCTCTGCCGTGCCTGCGACGAAAAGGTTCACATGTGTAATAAGCTAGCTAGCCGGCATATCAGGGTTGGCCTTGCCAGTCCAAGTGATGTGCCACGCTGTGACATTTGTGAGAATGCACCTGCTTTCTTTTACTGCGAGACAGATGGAACTTCTCTGTGTTTGCAATGTGACATGATAGTTCACGTTGGAGGTAAAAGAACACATGGAAGATATCTTCTTTTCAGGCAGCGGGTTGAATTTCCAGGAGATAAACCTGGTCAAGCAGAAACCCCAGGTTCACAGCCTCTGGATGCTGTTGGCCAAAATTCATTGCTTAAAATAAAAATGGGAGAGAAACAACAAAATCATAGGATGCCAACCCCAGAACATGATGCTGATGGCTATGCCAAGATGGATGCTAAAATGATTGATCTGAACATGAAGCCTCAGAGAATACATGACCATGGGTCAAATAATCAGCCATAA 534 0.4738 MRTLCDACERAAAIVFCAADEAALCRACDEKVHMCNKLASRHIRVGLASPSDVPRCDICENAPAFFYCETDGTSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPGQAETPGSQPLDAVGQNSLLKIKMGEKQQNHRMPTPEHDADGYAKMDAKMIDLNMKPQRIHDHGSNNQP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2353 177 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Acco11g2353 177 Gene3D Classic Zinc Finger 2 92 - -
Acco11g2353 177 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 142 - -
Acco11g2353 177 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Acco11g2353 177 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Acco11g2353 177 CDD Bbox1_BBX-like 56 96 - -
Acco11g2353 177 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Acco11g2353 177 FunFam B-box zinc finger protein 19 2 92 - -
Acco11g2353 177 CDD Bbox1_BBX-like 4 47 - -
Acco11g2353 177 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Acco11g2353 177 SMART bboxneu5 51 96 IPR000315 GO:0008270
Acco11g2353 177 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2353 Acco-ChrAcco11 36921741 36923816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2353 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 63.636 4.50e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Acco11g2353 zf-B_box 1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2353 11 36921741 36923816 Acco11g2353 11 36921741 36923816 ECH