Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2348 ATGGAGTGCCTCCAAGCGGCGTTGAAGACCGGTTTCACCAGAGACGCAGCCGTGAAATATAACCCCCTGTCTTCTGTTGACGACTCCTCCGCCTTCAATCTCCCAAATGCCGCAACTTCCGATGACTTCTCTGTCGACGAACTCCTCGACTTTTCACACTTGGAAGAGCCATTCGAAGATGAAAACCACCAAAAGCCAGACCCTGCTTCTGTCTGCCCTCCACCTGTGGGTCCAAGTCATGAAATTTGTCACTTTACCTTCCCCTGTTCCGTCAGAGAAGATGTTGCCTCCTTGCCCTCCAGCGAACTCAGCGTACCGGCTGATGATTTGGCGAACTTAGAGTGGTTGTCTCATTTTGTCGAGGATTCCTTCGCCGTACATTCCTCTGCTTATCCCTCCGGAACCCTCATGGGAAAACCCAAGAGCCATACCGAGCAAAGGCCTGAACCGGACGACCGTATTTCGACTCATCCCCGTTTTAAAACTCCGGTTCCGGCTAAGGCCAGAAGCAAGAGAACGAGAACCGGAGTTCGGGTCTGGCCTTTCAGGTCTCCATCCTTAACCGAGTCATCTTCAAGCTCCTCGTCGTCTTCTTCATCCTCAACCCCCACGAGCCCCCTGTTCATTTCCGCTGGCGCAGGGCCCGAACAAGTTTACTCTGAGGCCAAGCCACCGGTGAAGAGACCCAAGAAAAAACCTTCGCCGGAGGGTGCCGCGGGGACGGGCGGAACAACGCAGACGCCACGCCGGTGCACCCACTGCGGGGTCCACAAGACGCCGCAGTGGCGAACTGGTCCGATGGGAGCGAAAACGCTCTGCAACGCATGCGGAGTCCGGTACAAGTCGGGTCGGCTTTTGCCGGAATACAGGCCCGCGTGTAGCCCGACATTCTCGAGCGAACTGCACTCGAACCACCACCGTAAAGTGCTGGAGATGCGGCTGAAGAAGGAGGAGGGAGTGGGAGGAGGCAAGTCCGGTCTAGGCGGGCCCCCGACTCCGGCAGTTCCGAGTTATTGA 1017 0.5683 MECLQAALKTGFTRDAAVKYNPLSSVDDSSAFNLPNAATSDDFSVDELLDFSHLEEPFEDENHQKPDPASVCPPPVGPSHEICHFTFPCSVREDVASLPSSELSVPADDLANLEWLSHFVEDSFAVHSSAYPSGTLMGKPKSHTEQRPEPDDRISTHPRFKTPVPAKARSKRTRTGVRVWPFRSPSLTESSSSSSSSSSSSTPTSPLFISAGAGPEQVYSEAKPPVKRPKKKPSPEGAAGTGGTTQTPRRCTHCGVHKTPQWRTGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRLKKEEGVGGGKSGLGGPPTPAVPSY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2348 338 ProSitePatterns GATA-type zinc finger domain. 251 276 IPR000679 GO:0006355|GO:0043565
Acco11g2348 338 FunFam GATA transcription factor 243 324 - -
Acco11g2348 338 MobiDBLite consensus disorder prediction 142 158 - -
Acco11g2348 338 SMART GATA_3 245 299 IPR000679 GO:0006355|GO:0043565
Acco11g2348 338 MobiDBLite consensus disorder prediction 318 338 - -
Acco11g2348 338 ProSiteProfiles GATA-type zinc finger domain profile. 245 281 IPR000679 GO:0006355|GO:0043565
Acco11g2348 338 CDD ZnF_GATA 250 298 IPR000679 GO:0006355|GO:0043565
Acco11g2348 338 PIRSF Txn_fac_GATA_plant 19 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Acco11g2348 338 Gene3D - 242 317 IPR013088 GO:0006355|GO:0008270
Acco11g2348 338 Pfam GATA zinc finger 251 285 IPR000679 GO:0006355|GO:0043565
Acco11g2348 338 MobiDBLite consensus disorder prediction 184 208 - -
Acco11g2348 338 PANTHER GATA TRANSCRIPTION FACTOR 36 317 - -
Acco11g2348 338 MobiDBLite consensus disorder prediction 132 252 - -
Acco11g2348 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 247 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2348 Acco-ChrAcco11 36865499 36866601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2348 5 317 C2C2-Gata Transcription Factor Family AT5G66320 51.562 3.62e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco11g2348 GATA 1.8e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2348 11 36865499 36866601 Acco11g2348 11 36865499 36866601 ECH