Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2293 ATGGAACTGAGAGGTTTAGATAAGGAAATAGAGATGCCATTACCAACCACTTCAGGGTATAATCGCTCCAACAGGGACTTATCTTCTTCTCCAACTCTAGCTTCAACAGCAGGCGAAACGACTAGTGATCATCAACCTCCTCAAAGTTCAGAACACTATCATCATCATCATCATCATCCTTCTCTGCAATCGAGCCATCTTCAGCAATTGCAGAGAAACACAAGAGATCCAGATCCGCCGAGCGTAACGGCGATCACACCGATTGCTAGCAGATCAAACCCAAGACCAGCAATTAGGTACAGAGAATGCTTGAAGAATCATGCGGCAAGCATGGGAAGACACGTCGTGGATGGATGCGGCGAGTTCATGCCAAGCGGAGAAGAAGGCACTTCACAATCATTGAGATGTGCTGCTTGTGACTGCCACCGGAATTTCCACCGTAAAGAGACCGACGGTGAGCCTCAAACTAATGTTCTCAATTTCTACGCCTACCCTCCCAGAAAAAGCAATAACGCACAAAGTAGGATTCTGTCTCCCCAGTTTCCGCCACCCCCTCCATCCCTACATCATCATCATCAACAGCAACATATGAGATTTTCAGGAGGATCGTTCCCGCCGTTGATGATGGCCTTCGGCGGTGGCAGTGGGGCGGCAGAGTCTTCAAGCGAAGATCTGAACATGTTTCAGTATAATGGAGCGGGAGGGCAAGGTTCAGTGCAGGCGGGAACGTCATCGAAGAAGAGGGTTAGGACCAAGTTTCTCCAGGAGCAGAAGGAGAGGATGATGGAGTTCGCAGAGAAGTTGGGATGGAAGATCCAGAAACATGACGAGCAAGACGTACTACAGTTTTGTAATCAAGTGGGTGTGAAACGACAGGTTTTCAAGGTTTGGATGCACAATAACAAGCAGGCCATGAAGAAGAAGCAAATGTAA 933 0.4812 MELRGLDKEIEMPLPTTSGYNRSNRDLSSSPTLASTAGETTSDHQPPQSSEHYHHHHHHPSLQSSHLQQLQRNTRDPDPPSVTAITPIASRSNPRPAIRYRECLKNHAASMGRHVVDGCGEFMPSGEEGTSQSLRCAACDCHRNFHRKETDGEPQTNVLNFYAYPPRKSNNAQSRILSPQFPPPPPSLHHHHQQQHMRFSGGSFPPLMMAFGGGSGAAESSSEDLNMFQYNGAGGQGSVQAGTSSKKRVRTKFLQEQKERMMEFAEKLGWKIQKHDEQDVLQFCNQVGVKRQVFKVWMHNNKQAMKKKQM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2293 310 Gene3D - 233 307 - -
Acco11g2293 310 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 100 149 IPR006456 -
Acco11g2293 310 Pfam ZF-HD protein dimerisation region 98 150 IPR006456 -
Acco11g2293 310 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 99 149 IPR006456 -
Acco11g2293 310 MobiDBLite consensus disorder prediction 1 93 - -
Acco11g2293 310 MobiDBLite consensus disorder prediction 169 194 - -
Acco11g2293 310 SUPERFAMILY Homeodomain-like 235 307 IPR009057 -
Acco11g2293 310 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 66 303 - -
Acco11g2293 310 MobiDBLite consensus disorder prediction 63 90 - -
Acco11g2293 310 NCBIfam homeobox domain, ZF-HD class 246 303 IPR006455 -
Acco11g2293 310 MobiDBLite consensus disorder prediction 16 47 - -
Acco11g2293 310 FunFam Zinc-finger homeodomain protein 2 234 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2293 Acco-ChrAcco11 36485646 36486578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2293 94 307 ZF-HD Transcription Factor Family AT1G75240 49.160 1.97e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco11g2293 ZF-HD_dimer 2.9e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2293 11 36485646 36486578 Acco12g2090 12 32484515 32485288 CCT
Acco11g2293 11 36485646 36486578 Acco11g2293 11 36485646 36486578 ECH
Acco12g2090 12 32484515 32485288 Acco11g2293 11 36485646 36486578 ECH