Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2288 ATGCACCGTTGCTGTGGTTCGCATCAGGGGCACGTGATGGGACCGTGTACATGTGGTATGTTTCACGGCCAAACAACTTCCTTCTCTATGCTCTTTTCCATGCCCAACCACAAATCCTACGGTGGTGACTACGATAATATGTATTCTTTCGCCGCTACCTCTCCTTCCTCTTCTTCCGTTGACTGCACCCTCTCTCTCGGCACCCCTTCCACCCGTTTATCCCAAGACGAAGAAAAACGCCACCGCCGTGACCCTCGCTCGGTCTCAAACTTCTGTTGGGATTTATTACAATCCAAACACACCTCTGAATCCCACACCAAGTCCACCCGCAACACCAGTACTAGTAACTCCTCTAACAATGATCCCCTCCTCGCTCGTCGTTGTGCTAACTGTGACACCACTTCCACTCCCCTCTGGAGAAACGGCCCTCGAGGCCCCAAGTCTCTATGCAATGCCTGTGGGATTAGGTTCAAGAAGGAAGAGAGGAGGGCGGGTGCGGTGGCCGCCACGACGGCGGTCAACTCAGTCGGCGTCATGGAGTCGGCGCAGATGTTTACCGGACACCATAACGCTTCATGGTACGCGCCCTCTCAGAGCCAGAAAATGATGGGCAGTGAGTTTCGCTTTGAGGATGACGCCGCCGACCGGGACGGCGACCGCGGCGGCATTCCGTTTCTGTCTTGGAGGCTCAACGTTACGGACAGACCGAACCTTGTTCATGGTTTTACGAGATGA 735 0.5469 MHRCCGSHQGHVMGPCTCGMFHGQTTSFSMLFSMPNHKSYGGDYDNMYSFAATSPSSSSVDCTLSLGTPSTRLSQDEEKRHRRDPRSVSNFCWDLLQSKHTSESHTKSTRNTSTSNSSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAGAVAATTAVNSVGVMESAQMFTGHHNASWYAPSQSQKMMGSEFRFEDDAADRDGDRGGIPFLSWRLNVTDRPNLVHGFTR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2288 244 Gene3D - 124 187 IPR013088 GO:0006355|GO:0008270
Acco11g2288 244 ProSiteProfiles GATA-type zinc finger domain profile. 122 158 IPR000679 GO:0006355|GO:0043565
Acco11g2288 244 Pfam GATA zinc finger 128 162 IPR000679 GO:0006355|GO:0043565
Acco11g2288 244 MobiDBLite consensus disorder prediction 107 122 - -
Acco11g2288 244 ProSitePatterns GATA-type zinc finger domain. 128 153 IPR000679 GO:0006355|GO:0043565
Acco11g2288 244 SMART GATA_3 122 174 IPR000679 GO:0006355|GO:0043565
Acco11g2288 244 MobiDBLite consensus disorder prediction 103 122 - -
Acco11g2288 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 163 - -
Acco11g2288 244 PANTHER GATA TRANSCRIPTION FACTOR 18 11 244 IPR044272 GO:0003700|GO:0009908
Acco11g2288 244 CDD ZnF_GATA 127 159 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2288 Acco-ChrAcco11 36438583 36439418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2288 17 244 C2C2-Gata Transcription Factor Family AT3G50870 43.151 7.50e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco11g2288 GATA 5.9e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2288 11 36438583 36439418 Acco12g2088 12 32464584 32465438 CCT
Acco11g2288 11 36438583 36439418 Acco11g2288 11 36438583 36439418 ECH