Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2272 ATGGAGAACGGAGTGAAGAGCAATGGAGATGCAAAGTCACCGACTTTAGTAGAAAACAGTGAGGTGAAGATGGAGACAGAGGAAGTTGATGTTAAGAATGACGAGCCTTTAATATCAAGGTCAATAGAAGAAGAGGAAAAACGGCTTTTGGAAACTCGAATCAAGGAAGAGGAGGAGGAATCCAAACATGAGCCAGAGGAGGCACTAAAGCTTGATGATTCCCAGTTTAGCAAGTTGGATGAGCTTTTAACACAAACCCAACTTTACTCGAAATTTCTATTCGAGAAAATGGAAGACATCACACTTAATGGGTGCGAACACGAGGATGAGCCGGTTGAGAAAAAGAAGGGCCGTGTCTCAAAAAGAAAAGCAAAATCAGAATATAATAATTTTGATGTGTTGCAATCAATTATGTTCTGCGGTTTGAAATTATTTCAGAAGAAAGCCAGAAGGGCAGTAGCTGCCATGCTTACACGATCAAAAGAAAGTGAGAGCACTGAAGATATGAACCTGACAGAAGAGGAAAGAACTGATAAGGAGCAGAAAGAGCTTATACCTCTGTTGACAGGTGGAAAGTTGAAGCAATATCAAATGAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGTTTCCTTGCACATCTGAAAGGGAATGGTTTGGATGGCCCATATTTGATAATTGCTCCTCTATCAACCCTTTCTAACTGGATGAGTGAAATTTCTCGGTTTGCTCCAACGCTCACTGCTATTATTTACCATGGTAGCAAGAAGGAAAGAGATGAGCTCCGAAGGAAGCATATGCCCAGAACGGTTGGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCGTTAAATGATGCTAGGAGATGTCTCATGTCCTACCATTGGAAATATCTTGTAATTGACGAGGGACACAGGCTCAAAAACTCAAAGTGCAAATTAGTCCAGATGTTGAAATATTTATGTGTTGAAAATAAACTTCTTTTAACTGGGACACCTCTTCAGAATAATTTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCGCATCTCAAGAAGAATTTGAGTCATGGTTTAATCTATCGGGAAAGTGCAGTAATGGAGCTACAACAGAAGAATTAGAAGAAGGAAGAAGAGCTCAGGCATGCATTGATAAGACAGCTTCTGTGGTAGCTAAGCTCCATGCTATCCTGCGCCCCTTTCTTCTCCGAAGGATGAAGAGCGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATCATTTTATATGCTATTATGACTGAACATCAGAAGAATTTTCAGGAACATTTAGTTAATAAGACATTGGAGAAATATCTCCGTGAAAAATCTTCAGGGGGACGTGCTTCAATAAATATTCGTAATGTGGTCATTCAGCTTAGAAAGAACTGTAATCACCCCGATCTCTTAGAGTCACCCTTTGATGATTCCTTTTTCTATCCACCTATTGATGAGATGGTTGAAAAATGTGGGAAACTCCATTTACTAGACCGATTGTTGGCTCATTTACTTGCACGGAATCACAAAGTACTAATCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGAATTGATGGCGGAGTAAAGCTACATGAAAGGAAAAGACTGATTCAGGAATTCAACGATGTGAATAGCAATTACAGGATCTTTCTTCTCACTACTAGGGCTGGTGGATTGGGAATTAATCTTACTGCAGCTGACACTTGTATCATTTATGATAGTGATTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAGCCTGTTCATGTTTACAGGCTTGCAACAGCTCACTCTGTCGAGGTATATGGCTACCTTGGTCGCATGTTGAAAATAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGTAAAGGGGCAATTTAATGAAGAACGGATGAAGCCCAACTCTGAGGATGTCAAAGAGGAGGATGAGGAATTGTTGGAATTGCTTAAAGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTGGAGAAGCTTTTGGACCGCAGTGATCTTATCGCTGGTAATATGAACTGCCCGAGCAAAATTCCTCTTAAAGGACCTGGATGGGAGGTGGTGATTCCAACCGGGAGCGTGCTTTCTACTCTTAACAACTAA 2304 0.4058 MENGVKSNGDAKSPTLVENSEVKMETEEVDVKNDEPLISRSIEEEEKRLLETRIKEEEEESKHEPEEALKLDDSQFSKLDELLTQTQLYSKFLFEKMEDITLNGCEHEDEPVEKKKGRVSKRKAKSEYNNFDVLQSIMFCGLKLFQKKARRAVAAMLTRSKESESTEDMNLTEEERTDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGNGLDGPYLIIAPLSTLSNWMSEISRFAPTLTAIIYHGSKKERDELRRKHMPRTVGPKFPIVITSYEVALNDARRCLMSYHWKYLVIDEGHRLKNSKCKLVQMLKYLCVENKLLLTGTPLQNNLAELWSLLNFILPDIFASQEEFESWFNLSGKCSNGATTEELEEGRRAQACIDKTASVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYAIMTEHQKNFQEHLVNKTLEKYLREKSSGGRASINIRNVVIQLRKNCNHPDLLESPFDDSFFYPPIDEMVEKCGKLHLLDRLLAHLLARNHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGGVKLHERKRLIQEFNDVNSNYRIFLLTTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAHSVEVYGYLGRMLKIAFSKLKLEHVVIVKGQFNEERMKPNSEDVKEEDEELLELLKEEESAEDKAIQTDISDEDLEKLLDRSDLIAGNMNCPSKIPLKGPGWEVVIPTGSVLSTLNN 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2272 767 Coils Coil 40 62 - -
Acco11g2272 767 MobiDBLite consensus disorder prediction 1 15 - -
Acco11g2272 767 CDD SF2_C_SNF 513 647 - -
Acco11g2272 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 431 IPR027417 -
Acco11g2272 767 FunFam Chromatin complex subunit A 106 441 673 - -
Acco11g2272 767 Gene3D - 437 741 IPR027417 -
Acco11g2272 767 Gene3D - 158 419 IPR038718 -
Acco11g2272 767 SMART helicmild6 553 637 IPR001650 -
Acco11g2272 767 Pfam Helicase conserved C-terminal domain 526 637 IPR001650 -
Acco11g2272 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 527 702 IPR001650 -
Acco11g2272 767 SMART ultradead3 189 384 IPR014001 -
Acco11g2272 767 PANTHER SNF2/RAD54 HELICASE FAMILY 35 712 - -
Acco11g2272 767 MobiDBLite consensus disorder prediction 21 68 - -
Acco11g2272 767 Coils Coil 691 714 - -
Acco11g2272 767 MobiDBLite consensus disorder prediction 1 68 - -
Acco11g2272 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 733 IPR027417 -
Acco11g2272 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 373 IPR014001 -
Acco11g2272 767 FunFam ATP-dependent DNA helicase DDM1 187 440 - -
Acco11g2272 767 Pfam SNF2-related domain 196 501 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2272 Acco-ChrAcco11 36299698 36305036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2272 179 654 RAD5 or RAD16-like Gene Family AT3G16600 24.570 6.44e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco11g2272 SNF2_N 2e-65 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2272 11 36299698 36305036 Acco11g2272 11 36299698 36305036 ECH