Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2269 ATGGGAGACTACAACGATGCTTTCATGCGCAACCAAAACGCTGCCGTGCAGGCTCGTACCAAAGCTCAGAACCGTGCTAATGTCCTCCAGCTCAAGCTGATCGGACAGAGTCATCCAACTGGTCTCACGGCTAACCTTTTGAAGCTGTTTGAGCCTAGGCCTCCTTTAGAATATAAACCACCTCCGGACAAAAGGAAATGTCCGCCATTAACAGGGATGGCACAATTTGTGAGCAAGTTCGCAGAACCTGGAGATCCCGAATATGCCCCTCCTGTCCAAGAAGCTGAGACTCCTATGCAAAGAAGAGCTAGGATACACAAGCTAAGATTAGAGAAGGGGGAAGCAAAGGCTGCTGAAGAGCTAGAGAAATACGATCCTCATAATGACCCAAATATTTCGGGAGATCCCTACAAGACCTTGTTCGTGGCCCGACTTAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTCCGATTGGTTACAGACAAAAGCACAAATAAGCCCAAAGGATATGCATTCATTGAGTATCTGCACACAAGGGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGACGGGTGCTTGTAGATGTTGAACGTGGAAGGACTGTTCCCAATTGGAGGCCTCGCCGACTTGGTGGTGGGCTTGGTACTACTAGAGTAGGGGGAGAAGAAGTTAATCAGCGGTATTCTGGGAGGGAACAACTGCAATCAGGACCCTCTCGTTCTGAAGAACCAAAAGTGCGGGAGGAACGACAGGTTGATCGGGATAGAGAAAAATCTCGTGAAAGAGGTAGGGACAGAGATAAAGAACAGGAACGATCACGTGAACCTGAACGCTCTCATGATAGGAACCGCACTCGGGACCATAGAGAGGATAGACATCATAGAGATCGGGATAGGACTAGAGATAGGGAGAGGGAAAGAGATCGTGGCCGTGATCGCGATAGAGATCGTGGTCGTGATCGGGAGCGAGGACGCGATCGTGATAGGGAGAGGGATCGTGATAGGGACAGGGAATATGATCGTCATCGTGAAAGGGATAGGGACTATGAAGTTGGGGATCTTGAACGTGGACGCTCACATGATAGGGAGTCTGATTATGATCGTGTTGATTCTAAACATGAGAGGGATCGACATGGTGAAAGGGAGCGAGACTATGAACCTGAGGATGATCGTGCATGGTACAATCAACCTGAGCATGGGCATAGGCATGCAGATCCCGATCGTGATGCTGAGGAATATGATCACTATGAGCATCATCAAGGACGAGAACATTATGATCGTGGAGATGGTGACCATTATGATCAATATCCTGACCATGATCGGCTGGAGGATGACTACCACAATGAGAACACAGCATCTGAATCTCCATATCATCTCTGTGCTTTAAGGGTATGGAAAGATCAAATCACAACAGGAGAACTTAGTTGCTGCTATCATCAGCGTGAAATGGTTGTGGATTTCTGA 1515 0.4766 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPDKRKCPPLTGMAQFVSKFAEPGDPEYAPPVQEAETPMQRRARIHKLRLEKGEAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGPIKRVRLVTDKSTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQLQSGPSRSEEPKVREERQVDRDREKSRERGRDRDKEQERSREPERSHDRNRTRDHREDRHHRDRDRTRDRERERDRGRDRDRDRGRDRERGRDRDRERDRDRDREYDRHRERDRDYEVGDLERGRSHDRESDYDRVDSKHERDRHGERERDYEPEDDRAWYNQPEHGHRHADPDRDAEEYDHYEHHQGREHYDRGDGDHYDQYPDHDRLEDDYHNENTASESPYHLCALRVWKDQITTGELSCCYHQREMVVDF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2269 504 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Acco11g2269 504 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Acco11g2269 504 Gene3D - 125 250 IPR012677 -
Acco11g2269 504 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Acco11g2269 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Acco11g2269 504 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 337 - -
Acco11g2269 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Acco11g2269 504 MobiDBLite consensus disorder prediction 220 469 - -
Acco11g2269 504 MobiDBLite consensus disorder prediction 258 468 - -
Acco11g2269 504 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Acco11g2269 504 SMART rrm1_1 139 212 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2269 140 186 C2H2 Transcription Factor Family AT2G19380 40.426 1.55e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2269 11 36284455 36289574 Acco11g2269 11 36284455 36289574 ECH