Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2268 ATGTCACAGGCGGTCGGAACAGTGCTTGGCATCGTAGCACTTGTCGTTATTGCTATCGCATTTTATGTAATTTATACGACGAAGAAGAAAAGAGAGAAGGCTCCTAATCATGAAGATCCTCCTCTCGCACAACAAGGTGGTCGGAATTACAACAATGCACGGGAATCTGAGAGACAAAGCCAATTAAGTCAGGGACAAGGGTACGGTGAATTGAGGGTGGTAAAAGAGGTGAGCGAGGGCACATTCTCGTACGATGAGTTGGCATTAGCGACAAATGGATTTGTGAGAGAGAATTTGATAGGAGAAGGAGGACTTGGATACGTGCATAAAGGTATTTTACCAAATGGAAAGGCTATTGCAGTTAAAACCTTGAAGGAAGAAGGTCCATTTGGAATTGAGGCCTTCAAATCTGAGAGCGACGACATTGCACGTGTTCATCATCGACACCTCGTATTGCTCCTCGGATTTTGTATTTATCGTGGAAAAAGAATGCTTGTTTATGAATTTGTTCCTAATTCCAATCTGGAACATCATCTTCATGGAAAAGGTGTGCCTCCCATGAATTGGTCTCGCAGGATGCAGATTGCTATAGGAATTGCCAAAGGCCTTACCTACCTTCATGAAGATTGTGATCCTCCAATTGTCCATCGCAATATCAAAGCCGCTAATATCCTGATTGACGAAAGCTTTGAAGCCAAGGTGGCAGATTTTGGTCTGTCTAAGGTGATATCTGATAACAATACTCACGTTTCAACTCGTGTTATGGGGACATTGGGGTACTTGGCTCCCGAATATGCATCTAGTGGAAAATTAACACAGAAATCTGACACCTTCTCATTTGGGGTAATGTTACTAGAAATTTTGACTGGGAAGAGGCCCATGGCTCTCTCACATGCCCTTGATGATAACTTGGTGGATTTCGCTCGACCATTACTGAATCGAGGGTTAGAAAATGGAAACTTCAGAGAGTTAGTGGATGCATTTCTAGAAGGACGCTATAATAACCAAGAAGTTGCTCGCATGGCTGCTTGCGCTGCGGCCAGCATTCGTCATTCTCCCAAAAAACGTCCAACCATGAGACAGATTCTACTTGCTTTGGAAGGAAGTGCTTCATCGGAGGATTTGATTGATGCGGGTATACCCCTTCATAATTTCAATTAG 1161 0.435 MSQAVGTVLGIVALVVIAIAFYVIYTTKKKREKAPNHEDPPLAQQGGRNYNNARESERQSQLSQGQGYGELRVVKEVSEGTFSYDELALATNGFVRENLIGEGGLGYVHKGILPNGKAIAVKTLKEEGPFGIEAFKSESDDIARVHHRHLVLLLGFCIYRGKRMLVYEFVPNSNLEHHLHGKGVPPMNWSRRMQIAIGIAKGLTYLHEDCDPPIVHRNIKAANILIDESFEAKVADFGLSKVISDNNTHVSTRVMGTLGYLAPEYASSGKLTQKSDTFSFGVMLLEILTGKRPMALSHALDDNLVDFARPLLNRGLENGNFRELVDAFLEGRYNNQEVARMAACAAASIRHSPKKRPTMRQILLALEGSASSEDLIDAGIPLHNFN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2268 386 MobiDBLite consensus disorder prediction 45 66 - -
Acco11g2268 386 Gene3D Transferase(Phosphotransferase) domain 1 170 378 - -
Acco11g2268 386 CDD STKc_IRAK 100 368 - -
Acco11g2268 386 FunFam Proline-rich receptor-like protein kinase PERK4 170 376 - -
Acco11g2268 386 Gene3D Phosphorylase Kinase; domain 1 54 169 - -
Acco11g2268 386 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 12 375 IPR047117 -
Acco11g2268 386 MobiDBLite consensus disorder prediction 32 66 - -
Acco11g2268 386 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 70 169 - -
Acco11g2268 386 ProSiteProfiles Protein kinase domain profile. 94 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g2268 386 SUPERFAMILY Protein kinase-like (PK-like) 78 366 IPR011009 -
Acco11g2268 386 Pfam Protein tyrosine and serine/threonine kinase 97 363 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2268 Acco-ChrAcco11 36280270 36282462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2268 9 375 Trihelix Transcription Factor Family AT1G70460 46.851 3.55e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Acco11g2268 PK_Tyr_Ser-Thr 4.6e-44 CL0016