Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2249 ATGCCAGTTGATTTAGATAATTCTTCAACAGCTTCAGGGGAAGCTAGCGTCTCTTCCTCTGGCAATCAGACAGCTCCTCCTCCAAAGTCCACTGCTAAGAAGAAGAGAAATCTTCCAGGAATGCCTGATCCAGACGCGGAGGTGATTGCACTGTCTCCGAAGACCCTTTTAGCGACGAACCGATTCGTGTGTGAAATCTGCAACAAAGGATTTCAGAGGGATCAGAATCTTCAACTCCATCGACGGGGTCATAATCTGCCATGGAAGCTGAGGCAGAGGTCAAGCAAGGAGGTTAGGAAAAGAGTCTATGTTTGTCCTGAGCCAACCTGCGTTCATCATGATCCCTCTAGAGCTTTGGGTGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACATGGCGAAAAGAAGTGGAAATGTGACAAGTGTTCTAAGAAATATGCGGTTCAGTCAGATTGGAAGGCTCACTTCAAGATTTGTGGCACCAGAGAGTACAAATGCGATTGTGGGACTCTGTTTTCAAGGAGGGATAGCTTCATCACACACAGAGCATTCTGTGATGCGTTGGCAGAGGAGAGTGCAAGAAATCAGCCTCAGCCTCAGCCCCAGCCCCAGCCCCAGCCCCAGACTCAAACCCAGACACAAGCTTCTGAGAAGCCTAATTCAGAATCGGACCCAAAAATTACAAGCGGCGATTCATCCCCTTCAGTTCCTGCACCTGCGCCTGCGCCGGCGCCTCCGCCACCACCTACAGCCCCGTCTCCGGCTCCTCAGTCAAGTAGCGTCATACCATCTACCTTTCAGACAAATAATCCAGAGATGCCCGAAAATCCTCCACAAATCATAGAGGAACCACAGGCAACTGCTGCTTTAAATGGTAGCTGTAGCAGCAGTACAAGCTCAACCAGCAACGGCGGCACCGGTAGTACTGTATTTGCAAGCTTGTTTGCTTCCTCCACTGCTTCTGGAAGCCTTCAACCTCCTCCTCAACCTCAAGCTCCTCCAGCATTCACTGACCTAATCCGGGCCATGGCTCCGCGGGATCGTCCAGCAGAGCTCTCTGTGCCTTCATCCTCAGAACCCATTTCTCTCTGCCTCTCCACGAGCAATGGGTCGTCAATCTTTGGAACAGGAGGACAAGAACGTCGCCAGTATGCCCCATCACCACAGCCAGCCATGTCCGCCACGGCACTACTACAGAAAGCTGCTCAAATGGGTGCAGCTGCAACAAATGCATCATTGCTTCGCGGGTTTGGTATAGTGTCATCTTCCTCCTCTTCTCCGTCATTGAGCTTGCAAGATAACATGCCGTGGGGTCAGAGGCAAGTAGAACCAGAGAATGCATCTGTTCATGCCGGGCTTGGACTTGGGCTCCCATGTGATGGTGGCTCTGGACTGAAGGAATTGATGATGGGGACGCCCTCCATGTTCGGTCCAAAGCACACAACCCTTGACTTTCTGGGGTTGGGGATGGCCGCTGCCCCTACCGGAGGCTTATCAGCACTCATCACTTCTATTGGTGGTGGTCTGGATGTTTCAGCCACAGCAACACCATTTGGTGGTGGAGACATTTCAGGTAAAGATATTGGGAGGAGCTCATGA 1602 0.5125 MPVDLDNSSTASGEASVSSSGNQTAPPPKSTAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHFKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARNQPQPQPQPQPQPQTQTQTQASEKPNSESDPKITSGDSSPSVPAPAPAPAPPPPPTAPSPAPQSSSVIPSTFQTNNPEMPENPPQIIEEPQATAALNGSCSSSTSSTSNGGTGSTVFASLFASSTASGSLQPPPQPQAPPAFTDLIRAMAPRDRPAELSVPSSSEPISLCLSTSNGSSIFGTGGQERRQYAPSPQPAMSATALLQKAAQMGAAATNASLLRGFGIVSSSSSSPSLSLQDNMPWGQRQVEPENASVHAGLGLGLPCDGGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAAPTGGLSALITSIGGGLDVSATATPFGGGDISGKDIGRSS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2249 533 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Acco11g2249 533 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Acco11g2249 533 FunFam protein indeterminate-domain 12-like 41 109 - -
Acco11g2249 533 MobiDBLite consensus disorder prediction 191 280 - -
Acco11g2249 533 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Acco11g2249 533 MobiDBLite consensus disorder prediction 208 236 - -
Acco11g2249 533 Gene3D Classic Zinc Finger 116 196 - -
Acco11g2249 533 Gene3D Classic Zinc Finger 42 108 - -
Acco11g2249 533 MobiDBLite consensus disorder prediction 1 45 - -
Acco11g2249 533 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 493 IPR031140 -
Acco11g2249 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Acco11g2249 533 MobiDBLite consensus disorder prediction 258 276 - -
Acco11g2249 533 SMART c2h2final6 103 133 IPR013087 -
Acco11g2249 533 SMART c2h2final6 62 84 IPR013087 -
Acco11g2249 533 SMART c2h2final6 138 158 IPR013087 -
Acco11g2249 533 MobiDBLite consensus disorder prediction 1 30 - -
Acco11g2249 533 MobiDBLite consensus disorder prediction 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2249 Acco-ChrAcco11 36144420 36146748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2249 1 533 IDZ Gene Family AT5G66730 60.256 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco11g2249 None None None