Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2240 ATGAGTATCTCCAAAGACACTTCGCTCTTTCTGGGAGAACATAACAATATAGAGAGAGAAAGGGGATTGGAGAGTGACATATCTATATTTTATACCACCATGAATCCTCATCCTCTTGATGACCACATGGTGGTTGTCTCTCAGCTATATCCTGGTGCTTACTCTCAGATAATTCCTCAACAAGGTGAGACAAAGCCGAGACGACGTCGTAAGAAGAACAAGGGAGGAGAAAACGGATCCGACGGCGGAGTGAAGAAGAGGAAGCTGAGTACAGAGCAAGCGAATCTGTTAGAACTGAACTTCGGGAACGAACATAAATTGGAGTCAGAAAGGAAGGACAGGCTAGCGTCGGAACTGGGTTTGGATCCTCGTCAGGTGGCTGTTTGGTTCCAAAACCGAAGAGCGCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCTAACCTTAAGAAAGTCCACGACTCCACCATTCTCGAGAAATGCCGCCTTGAAACCGAGGTATTGAAGCTGAAGGATCAGCTTTCAGAAGCAGAGAAAGATATTCAACGACTTCTCGAGCGAGTCGATAGGGTATCAAACAGTAACAGCCCAAGTTCGTCACTGTCCATTGAAGCTGTGAACCCACCGTTTCTGGGAGATCTTAGGGTTGAGGCTTATGATGATGACGTGTTTTACATGCAGCCGACACAATACATCAATGGCATGGATGAGTGGATATACATGTGA 726 0.4601 MSISKDTSLFLGEHNNIERERGLESDISIFYTTMNPHPLDDHMVVVSQLYPGAYSQIIPQQGETKPRRRRKKNKGGENGSDGGVKKRKLSTEQANLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKVHDSTILEKCRLETEVLKLKDQLSEAEKDIQRLLERVDRVSNSNSPSSSLSIEAVNPPFLGDLRVEAYDDDVFYMQPTQYINGMDEWIYM 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2240 241 SUPERFAMILY Homeodomain-like 84 148 IPR009057 -
Acco11g2240 241 Coils Coil 132 159 - -
Acco11g2240 241 MobiDBLite consensus disorder prediction 56 89 - -
Acco11g2240 241 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Acco11g2240 241 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Acco11g2240 241 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Acco11g2240 241 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Acco11g2240 241 SMART HOX_1 83 144 IPR001356 GO:0003677
Acco11g2240 241 Coils Coil 167 194 - -
Acco11g2240 241 FunFam homeobox-leucine zipper protein ATHB-40 79 148 - -
Acco11g2240 241 Gene3D - 76 148 - -
Acco11g2240 241 MobiDBLite consensus disorder prediction 74 89 - -
Acco11g2240 241 CDD homeodomain 85 141 IPR001356 GO:0003677
Acco11g2240 241 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 63 199 IPR045224 GO:0003700
Acco11g2240 241 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2240 Acco-ChrAcco11 36088256 36090052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2240 34 239 Homeobox Transcription Factor Family AT4G36740 56.808 4.72e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Acco11g2240 Homeodomain 8.6e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2240 11 36088256 36090052 Acco12g2061 12 32240252 32241817 CCT
Acco11g2240 11 36088256 36090052 Acco11g2240 11 36088256 36090052 ECH