Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2221 ATGGCCTCTCAAAGCTTCAATTCGACGCTATGTCATTTTGCTTTTGCTTTTGCAATGATCCTTTTCATTTCTGCTCCAGTCCTTGGTTCTGCCCAGATGACTGGTTTAAGCATGAACGTGATTGATAAATGTTGGAGAATGAACTCAGAGTGGCGGAGACACCGCCCACAACTTGCAACTTGTTCTGCGGGTTACGCCGGAAAGATGACCGACAACATTGGCAAAGACCTCGTCCACTACAAAGTCACTGACCCTAGTGACGACCCAATAAACCCTAAACCAGGCACATTAAGATATGGAGCTTCCATAATTCAAAGCAGAGTGTGGATCACATTCCAAAGAGACATGCATATTAAGCTTCTCAAGCCCCTTCTCATCAGCAGCTTCACCGCCATTGATGGCCGAGGCGTCAATGTTCATATTTCTCATAATGCATGCTTGATGATCTTCAAGACGACCAACATTATAATACATGGCATTCGGATTCATCACTGTAAGGCTCAACCTGCAGGGATTGTGGTGGGTCCAGAAGGGAAGGTAATTCCAGTAGGTCAGGTGGATGGGGATGCGATCAGATTGGTTACAGCCTCCAACGTATGGATTGACCATAATACGTTGTATGATTGTCAAGATGGACTTCTGGATGTTACGAGGGGTTCCACCAACGTGACCATCTCTAACAATTGGTTTAGAGACCAAGACAAGGTTATGCTTCTTGGACACGACGATGGTTACGACAGGGACAAGAACATGAAGGTCACCGTGGTGTACAACCATTTTGGACCTAACTGCAACCAACGCATGCCTAGAATTCGATATGGGTATGCACATGTAGCCAACAATCTATACCAAGGATGGATGCAATACGCCATTGGTGGAAGCATGGGACCCAGCCTCAAAAGTGAAGCCAACCTCTTCATAGCACCAACATCAGGAAACAAAGAGGTGACCTGGAGAAAAGAGAGCAATGGGAATATGGGAAAGTGGGAGTTCCATTCGGTGGGGGATGTGTTTGAAAATGGAGCTTGCTTCACCGCAACAAAAGGAGGGCGAGTACCAAAGCCTTATTATAACAGCCAACAGATTTTTAAAGTTGCAGACGCCAAATATGTGAGGGCATTAACCAGATCTTCTGGTGCCTTGCGTTGCAGCAAAACCTCCAGATGTTGA 1170 0.4598 MASQSFNSTLCHFAFAFAMILFISAPVLGSAQMTGLSMNVIDKCWRMNSEWRRHRPQLATCSAGYAGKMTDNIGKDLVHYKVTDPSDDPINPKPGTLRYGASIIQSRVWITFQRDMHIKLLKPLLISSFTAIDGRGVNVHISHNACLMIFKTTNIIIHGIRIHHCKAQPAGIVVGPEGKVIPVGQVDGDAIRLVTASNVWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFRDQDKVMLLGHDDGYDRDKNMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWMQYAIGGSMGPSLKSEANLFIAPTSGNKEVTWRKESNGNMGKWEFHSVGDVFENGACFTATKGGRVPKPYYNSQQIFKVADAKYVRALTRSSGALRCSKTSRC 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2221 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Acco11g2221 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Acco11g2221 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Acco11g2221 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Acco11g2221 389 PRINTS Pollen allergen Amb family signature 86 111 IPR018082 -
Acco11g2221 389 PRINTS Pollen allergen Amb family signature 329 353 IPR018082 -
Acco11g2221 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Acco11g2221 389 SMART pbh1 220 240 IPR006626 -
Acco11g2221 389 SMART pbh1 152 176 IPR006626 -
Acco11g2221 389 SMART pbh1 196 217 IPR006626 -
Acco11g2221 389 SUPERFAMILY Pectin lyase-like 30 357 IPR011050 -
Acco11g2221 389 Pfam Pectate lyase 131 306 IPR002022 -
Acco11g2221 389 PANTHER PECTATE LYASE 18-RELATED 36 386 IPR045032 GO:0030570
Acco11g2221 389 Gene3D - 38 382 IPR012334 -
Acco11g2221 389 SMART amb_all 115 312 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2221 Acco-ChrAcco11 35943678 35945362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2221 69 316 Polysaccharide Lyase AT5G09280 72.581 4.22e-142 404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2221 11 35943678 35945362 Acco11g2221 11 35943678 35945362 ECH