Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2215 ATGGGAATAGCAACTCCATCGCCACTTGCAGCAATAATAATCTCTCATCACTCCAAGTCCAAGACCCACCATTCGTTTTTTCCCAATTTTATGTCCATGTCCCAAGATTATCATCAAGCAGGAATCTTCAGCTTCCCGAATGGATTCGAGAGATCCACCACTGTAACTCAGCAACCTCAGATCCGGAGAGACAAAGTCAGGGTGCAAGGCTTCGACCCACCACCATCTTTGGTAGGTATTGAGGAAGAGGAAACCGGAGGCCTTCCGGTGTACGAAACCGCCGGGATGTTATCGGAGATGTTTAGTTTCCCACCCACCGGCGCCACATCTTCAGAATTATTGGAACAACAACCCATGACGGCGACGTATCGATCGTTCAGCAGGCCACAGCAGACTTCTGCGATGGGCAGTAGTGAGTGGTACGGAGACCAACAAGGCATGATAAGTGGCTTGGGAGATTCCAAGAATCACCTCCGTCCTCATCAGCAGCGTCAGATTTCAAGCATGAATGTGGCAGCCATGCAGCTTTTTCTCATGAACCCTCAAACCAGATCGCCTTCTCCTCCTCCTCCTCCTCACAATCCTTCCACTACTTCTTCCACCCTCAACATGATGCTCCCCAATAATCCTCCCTCTTCTCTCCAAGAATTCCCTGGAACCGGAGGACCTTTTGGTCAATTCACCTGGCTTCCATTTTCGGAAGCAGGTTCTCAAGAAGTTGCAACTAACAGCAACCAAAATCCAGGTCAAATCGGAGGGGTTGTGGAAGGCCAAGGTCTTTCTTTGTCATTATCCTCTTCATTAGAAGCAGCAAAAGCCGAGGAACTGAGGATGGGCGGCGATGGCGGCTTTCTCAATTATTACGGAGGGTCCTATCCGTACAAGAATTTGGGTGGAGGTCAAGGTCAAACTCACACAACATTGCATTTGCAGGGAGTAGCGCAGAATAACCACCAAGTCCATGGTGGTTTCGGGTCATCGTTAGGGATTGCGAATGTGCTGAGGAACTCCAAGTATGTGAAGCCTGCTAAAGAATTGCTCGAAGAATTCTGCAACATTGGGAGGGGACAGTTCAAGAAGAACAAATTTACCCGTCACAACTCCAACCCTAATTCCAATTCCGGTGCTGTTGGTGCCTCCGCTTCTTCATCTTCAACAAAAGATCCTCCTCCTTTCTCCGCCGCCGACAGGATTGAGCATCAGAGAAGGAAGGTCAAACTCCTATCCATGCTTGATGAGGTGGACCGAAGATACAGTCACTACTGCGAGCAAATGCAAATGGTGGTGAACTCATTTGACTTGGTGATGGGTTTTGGGGCGGCGGTGCCATACACGGCGTTGGCACAGAAAGCAATGTCAAGACATTTCCGGTGCCTGAAGGAGGCAATATCAGCACAACTGAAACACAGTTTCGAGCTGCTGGGTGAGAAAGATGGCTTGGGTTCGTCGGGTTTGACCAAAGGTGAGACCCCAAGGTTGAAGTTGCTTGAACAAAGCCTGAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAGCAGGAGGCTTGGAGACCCCAGCGAGGCCTTCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAACATTTCCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTCGACAGACTGGCCTATCGAGAAATCAGGTATCAAACTGGTTCATTAACGCGAGGGTGAGGTTGTGGAAACCCATGGTAGAGGACATGTATCAGCAAGAGCTCAAAGAAGCTGATGATGAAGAAGAGAGAGAAATGAACCAAAGCAACAACAGCAACAATAGTGGCAACATGGCACAAACTCCAACGCCTACCACCACCACCACTTCAACGGCGTCAGCACCACCTACAACGCCACGAGCCAAAAGATCCGACGTTGTCAATGCCTCCGAAAGAGACCCCTCATCATTCGTTGCAATCAATAGACAAGCCCTCTCGGAAAACCAAGGAAAGCAACAGTCGTCCACCGCCGCCGCATCTGAGGTGGCGCCACCCGTTTCCCAATGTTTCCGATCAGACCTACCTCTGCACGGTCATGATGACACGTGTCGGCACGGCAGTATGGTTGCCGAAGACTGTGGGACTGCCTCGGCCACTGCTAACAATATTGGATCTACTCTCATTAGGTTCGGGACCACCGCCGGTGATGTGTCCCTCACCCTAGGGCTACGCCACGCCGGGAACATCCCTGACACCTCTCCTTTCTCTGTTAGAGATTTTGGAGGCATTTGA 2268 0.5053 MGIATPSPLAAIIISHHSKSKTHHSFFPNFMSMSQDYHQAGIFSFPNGFERSTTVTQQPQIRRDKVRVQGFDPPPSLVGIEEEETGGLPVYETAGMLSEMFSFPPTGATSSELLEQQPMTATYRSFSRPQQTSAMGSSEWYGDQQGMISGLGDSKNHLRPHQQRQISSMNVAAMQLFLMNPQTRSPSPPPPPHNPSTTSSTLNMMLPNNPPSSLQEFPGTGGPFGQFTWLPFSEAGSQEVATNSNQNPGQIGGVVEGQGLSLSLSSSLEAAKAEELRMGGDGGFLNYYGGSYPYKNLGGGQGQTHTTLHLQGVAQNNHQVHGGFGSSLGIANVLRNSKYVKPAKELLEEFCNIGRGQFKKNKFTRHNSNPNSNSGAVGASASSSSTKDPPPFSAADRIEHQRRKVKLLSMLDEVDRRYSHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKEAISAQLKHSFELLGEKDGLGSSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEADDEEEREMNQSNNSNNSGNMAQTPTPTTTTTSTASAPPTTPRAKRSDVVNASERDPSSFVAINRQALSENQGKQQSSTAAASEVAPPVSQCFRSDLPLHGHDDTCRHGSMVAEDCGTASATANNIGSTLIRFGTTAGDVSLTLGLRHAGNIPDTSPFSVRDFGGI 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2215 755 MobiDBLite consensus disorder prediction 361 398 - -
Acco11g2215 755 Pfam Associated with HOX 333 464 IPR006563 -
Acco11g2215 755 MobiDBLite consensus disorder prediction 197 216 - -
Acco11g2215 755 MobiDBLite consensus disorder prediction 588 647 - -
Acco11g2215 755 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 198 603 - -
Acco11g2215 755 MobiDBLite consensus disorder prediction 180 220 - -
Acco11g2215 755 Gene3D - 520 582 - -
Acco11g2215 755 Pfam Homeobox KN domain 534 573 IPR008422 GO:0003677|GO:0006355
Acco11g2215 755 Coils Coil 580 604 - -
Acco11g2215 755 CDD homeodomain 517 578 IPR001356 GO:0003677
Acco11g2215 755 ProSiteProfiles 'Homeobox' domain profile. 514 577 IPR001356 GO:0003677
Acco11g2215 755 MobiDBLite consensus disorder prediction 600 630 - -
Acco11g2215 755 FunFam BEL1-like homeodomain protein 4 520 582 - -
Acco11g2215 755 MobiDBLite consensus disorder prediction 363 390 - -
Acco11g2215 755 SMART HOX_1 517 581 IPR001356 GO:0003677
Acco11g2215 755 SUPERFAMILY Homeodomain-like 519 584 IPR009057 -
Acco11g2215 755 SMART prehox3 328 465 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2215 Acco-ChrAcco11 35892832 35898654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2215 328 753 Homeobox Transcription Factor Family AT2G23760 54.192 5.61e-146 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Acco11g2215 POX 5.2e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2215 11 35892832 35898654 Acco11g2215 11 35892832 35898654 ECH