Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2160 ATGAATCTCTATCCTCTTGTGCCTCCTTCGTTATCATCTCTCTATCTCGGTCATGCTAGCGAAAACCTGAAGCCGACACTCTCAGTTGTCACAGAAGAACAAATACCTCTAAACATGGACCTGAGCTTGGATTTGAGTTTGCCTTTTGTTCCCAAAACCATTTCTGAGTTCCTCGGTGAGGTCTCTAAGATCGGAGATGGGCACGAGAAATTAGCGATGCTTGACAATTTTGTCAAGAGATTGGAGGATGAAATGAGGAAGATCGAAGCCTTTAAACGCGAGCTTCCTCTCTGCATGTTGCTCGTAAACGATGCTGTAACGAGGTTGAAGGAAGAGAAAGTACGATTTGGGGAAGTGCTAGATCGACCTGGAATTGAAGAGTTCATAACATTGAAAGCAAATTCTAGAGAAAACGAACAATTAAATATAGAAAAAGATAGCTGTGACAAGAAGAATTGGATGAACTCTGCTCAACTGTGGAGCGCTGAAACCAAATTGGGAAGTGAGAATGATCGGTCTGTGCCAGAGAACTCAATTCAATCACAAAATCTGAAAAACAGAGGAGGGGCATTTATCCCCTTTAATGAAAATTTGGGCATGTCAAAGCCAGTGACGAAGGAAGACAAGGAAATCTCACAAGTTCCTAGTCTTAGCTTGATGACTCCAACGTCTGAACTGAATCTTAAGAATTCTAAAACTTGTAGCAGAAATTGTTCAAGTGTGTCTTTCCTTACTGGCAGGCTTGACGGACAAGTCCAACCACAACCTCAACATTTGCAACAAAATCCTAGAAAACAGAGGCGATGCTGGTCCCCGGAACTTCACCGGCGATTTGTTGATGCCCTTCAACAACTGGGAGGAGCTCAGGTGGCCACTCCTAAACAGATCAGAGAATTAATGCAAGTGGAGGGCCTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGACTTCATGTAAGAAGACTTCCAGCTTCAACAATTAACCAAGGAAATGGCCTGTGGATGGTAGAAGATCAATGTGGAGAAAAGACAAAAGTAAACTTATCACAGTCTGGTTCTCCCCAAGGACCTCTCTTACTTGCAGGTTCTGCTAAGGGTCCTTCAAGCTCTGGAGATGGTGAAGAAGATGAGAAATCAGATTGCCAAAGTTGGAAAGGTGGGATGCACCAGCAATCGGAAGCTGATGTACTGTGTTGA 1203 0.4323 MNLYPLVPPSLSSLYLGHASENLKPTLSVVTEEQIPLNMDLSLDLSLPFVPKTISEFLGEVSKIGDGHEKLAMLDNFVKRLEDEMRKIEAFKRELPLCMLLVNDAVTRLKEEKVRFGEVLDRPGIEEFITLKANSRENEQLNIEKDSCDKKNWMNSAQLWSAETKLGSENDRSVPENSIQSQNLKNRGGAFIPFNENLGMSKPVTKEDKEISQVPSLSLMTPTSELNLKNSKTCSRNCSSVSFLTGRLDGQVQPQPQHLQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRLPASTINQGNGLWMVEDQCGEKTKVNLSQSGSPQGPLLLAGSAKGPSSSGDGEEDEKSDCQSWKGGMHQQSEADVLC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2160 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 322 IPR017930 -
Acco11g2160 400 FunFam Myb family transcription factor 264 322 - -
Acco11g2160 400 SUPERFAMILY Homeodomain-like 263 323 IPR009057 -
Acco11g2160 400 Coils Coil 74 94 - -
Acco11g2160 400 Gene3D - 264 321 - -
Acco11g2160 400 MobiDBLite consensus disorder prediction 348 400 - -
Acco11g2160 400 NCBIfam myb-like DNA-binding domain, SHAQKYF class 265 320 IPR006447 GO:0003677
Acco11g2160 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 42 387 IPR044787 GO:0003700|GO:0006355
Acco11g2160 400 Pfam Myb-like DNA-binding domain 267 318 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2160 Acco-ChrAcco11 35534323 35535982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2160 39 315 G2-like Transcription Factor Family AT4G37180 44.523 9.08e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Acco11g2160 Myb_DNA-binding 1.7e-06 CL0123