Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2158 ATGTCATCGTCAAATTCTCCGTGCGCTGCGTGCAAGTGTCTGAGGCGGAAATGCACGCCAGAATGCGTGTTCGCACCGTACTTCCCACCGGACAATCCTCAGAGGTTTGCTTACGTCCATAGGATATTCGGGGCTAGCAATGTCGCTAAGCTTCTCAATGAGCTCAGCGCTGCACAGAGAGACGATGCCGTTAAGTCTCTTGCTTACGAAGCAGAGGCCCGTCTCCGGGACCCAGTCTATGGTTGTGTGGGTCTCATCTCCATGCTCCAGCACCGGCTCCGGCAGATCCAAGTAGAACTCAACAATGCCAAGAAGGAGCTCGCCACATATATTGGACCTCAGGCTCTTCAGGCCATGCCTCCCGCCATTCTAGCACCTTCTGGAATGATCCCTCAGCAACACCCAAGCAACCCATATTCTTCCACCGCGGGTTATCCCTACAACAGCATGCCACCGCCGGGGCCTATGACCAATATTCCGACCGGTGGCTCTTCTCATACCGGCCAACTCGTGATTCGTGACCCCTCCCAGCAGCATCAGATCTTGGAAGCTCAGCAGTTAGCTGTGGCCGTGGCGGGCAGAGAACAACAAGATATGTTTCGAGGTTGCGAGCAGCAGCAGCAACAAGAGTTTCTGAGATTCAATGGTGGATATGATGTGGGTTCGGTTTCTGGGAGTGGATTCAACAATCACATTTCTTCAACTGCTGCTCCCACCGACATGTCTCCTTCCTTGGCTCTCGGTTCCTTCGACGGCCCTTACGGCGGTCAGATGCAACCGCCTCAAGCCGAACACCACCATCACCACCAGCTTCAAGCTCAGCTAATGCTTTCCCCCCAGCAGCCTCAACCACAGCAACAAAGCCAGCAGTCACAGCAACCCCACCACCAGCAGCAACCGTCAGAAAGCACGGAGGGTAGGAATGGCATCTGCCTTTCTTGTTGA 945 0.546 MSSSNSPCAACKCLRRKCTPECVFAPYFPPDNPQRFAYVHRIFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISMLQHRLRQIQVELNNAKKELATYIGPQALQAMPPAILAPSGMIPQQHPSNPYSSTAGYPYNSMPPPGPMTNIPTGGSSHTGQLVIRDPSQQHQILEAQQLAVAVAGREQQDMFRGCEQQQQQEFLRFNGGYDVGSVSGSGFNNHISSTAAPTDMSPSLALGSFDGPYGGQMQPPQAEHHHHHQLQAQLMLSPQQPQPQQQSQQSQQPHHQQQPSESTEGRNGICLSC 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2158 314 Coils Coil 86 106 - -
Acco11g2158 314 MobiDBLite consensus disorder prediction 234 314 - -
Acco11g2158 314 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Acco11g2158 314 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 298 - -
Acco11g2158 314 MobiDBLite consensus disorder prediction 273 314 - -
Acco11g2158 314 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2158 Acco-ChrAcco11 35517515 35518459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2158 1 242 AS2 family AT5G66870 54.297 1.01e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco11g2158 LOB 4.2e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g2003 12 31605021 31605962 Acco11g2158 11 35517515 35518459 CCT
Acco11g2158 11 35517515 35518459 Acco11g2158 11 35517515 35518459 ECH