Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2145 ATGGTGGTGGGTCATGGAAAGAACCGAGGGGTAGATGATCGGTCGGGAAATAAGGAGGAGGCGGAGGACCAACCCCGTGCCTCTACGGCTGCTGGGAAAGCCGTTGCTCCTCCTCGGCACGGTAAAAATACGGATTACGACGATGACTTAACCCTAGCCAACTGGTCAAAGTCTCCCAAACGCTCCCCTCCTCCAACTACGCCTAAACGGAACAAGATGGTACAGAATCAACACAGGCTCTTGAAAATTCAGAAAAAACATATGGTTTCTCCAACTAATCAAGGTTTATCCGATCAGGCACAAAAGCTTGCAAGCTCCTCTAAGGTGGCAACAGACAGGACATTATCAGGAGAGGCCAGGTCGTCTGCTGTGTTTCGAGCAGAGGTGGTCCAATCAAAGTTAGATCCCAGATTCCCTAGCTTTGTGAAGTCATTGGTTAGATCACATGTTGGTGGTGTTTTTTGGATGGGGCTCCCAGCGTTTTTCTGTAAAAGATTCTTACCGGATATTGACGCTACGATTACTTTGGAAGATGAATCTGGTAAAGAATACCAGTTAAAATACATTGCTTGCAAGACAGGTTTAGGCGCTGGTTGGAGGCAGTTTTCTGCAGTCCACAAATTGCAGGACGGAGATGTTTTGGTTTTCCAATTAGTTGAACCTTCTAAATTTAAGGTATATATAATAAGAGCAAATGGCTCGAGCGAACTGGATGGGGCGAATCTGGATGATTATACCAAGCAAAAAGCAAGAGATAATGCAAATAAGGATTCTCTGCCGAGTAATATCCCCAAGAGGAAACAAGAAAAATCTAACCCACCATCTCCAACTATCCAAAAGAAAAAGAGGACAAGTGTGTCAAAGATTTCCCCCAAGGTTAGGCAGTGTGCAGAACAGTGTGAATATGAAAGTGATGAAGCTGGTTCAGAAGTACTGGAGGGCCTTGGAATGGACCTCAAATTCAAGGATGTAAAAGGTTTCGAAAATTTCAGTATCATAATTGATGGAATTCCAATGGATTCTGAGCTTCCCCAGGAGGTTCGAAATAAGTATTACAAACTGTGCCATAGCCAGCAGGCCTTTCTACACGAGAATCTCATAAAGGGCGTCAACCATAACCTCATTGTGGGCATTATATCTGAAGTTGTCAACATTGCTGACGCCTTGAGATCCCGCTCACTACGAATCTCAGCCGCTGAATTTGCTAAATGGGATAAGGAGTTGCTGGCATTTGAGTATTTGGGGATGAATGTGGAATTTTTAAGACATCATTTAGTTAGGTTTCTAAACTTGGCATATGAAACACAAGATGCATATGAAACACAGGATGCCTCTGAGACTTCAAGGTATTCAACGTCCCCTACTGAGTTCAGTCGAGCAGATAACGAAATAATGAATATTGAAACAAAGCTTGGAGAATTGAAAGAAGCTTGTGATGGTTTTGGTGCTTATATCGGGAGTTTGAAGCACAAAGCTGAGCGCTTCCATAATCATTAG 1497 0.4349 MVVGHGKNRGVDDRSGNKEEAEDQPRASTAAGKAVAPPRHGKNTDYDDDLTLANWSKSPKRSPPPTTPKRNKMVQNQHRLLKIQKKHMVSPTNQGLSDQAQKLASSSKVATDRTLSGEARSSAVFRAEVVQSKLDPRFPSFVKSLVRSHVGGVFWMGLPAFFCKRFLPDIDATITLEDESGKEYQLKYIACKTGLGAGWRQFSAVHKLQDGDVLVFQLVEPSKFKVYIIRANGSSELDGANLDDYTKQKARDNANKDSLPSNIPKRKQEKSNPPSPTIQKKKRTSVSKISPKVRQCAEQCEYESDEAGSEVLEGLGMDLKFKDVKGFENFSIIIDGIPMDSELPQEVRNKYYKLCHSQQAFLHENLIKGVNHNLIVGIISEVVNIADALRSRSLRISAAEFAKWDKELLAFEYLGMNVEFLRHHLVRFLNLAYETQDAYETQDASETSRYSTSPTEFSRADNEIMNIETKLGELKEACDGFGAYIGSLKHKAERFHNH 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2145 498 MobiDBLite consensus disorder prediction 1 74 - -
Acco11g2145 498 ProSiteProfiles B3 DNA-binding domain profile. 141 232 IPR003340 GO:0003677
Acco11g2145 498 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 71 232 IPR044837 -
Acco11g2145 498 Pfam B3 DNA binding domain 141 231 IPR003340 GO:0003677
Acco11g2145 498 SMART B3_2 141 232 IPR003340 GO:0003677
Acco11g2145 498 MobiDBLite consensus disorder prediction 87 114 - -
Acco11g2145 498 MobiDBLite consensus disorder prediction 255 290 - -
Acco11g2145 498 SUPERFAMILY DNA-binding pseudobarrel domain 134 233 IPR015300 -
Acco11g2145 498 Coils Coil 457 477 - -
Acco11g2145 498 MobiDBLite consensus disorder prediction 7 26 - -
Acco11g2145 498 MobiDBLite consensus disorder prediction 247 290 - -
Acco11g2145 498 CDD B3_DNA 139 230 IPR003340 GO:0003677
Acco11g2145 498 Gene3D - 118 233 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2145 Acco-ChrAcco11 35390601 35394066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2145 116 256 B3 DNA Binding Superfamily AT3G19184 47.260 7.01e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco11g2145 B3 9.3e-16 CL0405