Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2140 ATGTCATCGCAGAGATCGGTGCCGGCGCCGTTTCTGACGAAGACGTACCAGTTGGTGGATGATCCGGCCACCGACGACGTCATATCGTGGGGTGAGAGTGGGAACACGTTCGTGGTGTGGAAGCATGCGGATTTTGCCAAGGATTTGCTTCCCATCTATTTCAAGCACAACAACTTCTCAAGCTTCGTCCGTCAGCTCAACACCTATGGATTCCGGAAGATTGTTCCTGACAAATGGGAATTTGCGAACGAAAATTTCAAGCGAGGACAGAAGGAGCTGTTGACGGATATCAAACGTCGGAAGCCCGTGGTGCAATCGTTGGCGCAGGCGCCTGCGGCGTCGAACTCCGGCGGGGACGAAATGGGATCTTCCTCCACTTCGAATCTGGGAACCGTAGAGACAACGAGTTCTCAGGTGGCGAATTTATCGGGAGAGAACGAGAAATTGAGGAAGGATAACGAGATGCTGAGCTGGGAGCTGGCGCAAGCGAAGAAGCAGTGCGAGGAGCTGATAAGTTTTCTGAAGGAGCACGTGAAGATGGGTCCGGATCAGATCCATCGGATTATGCGGCAAGGAAGTTGTGGATCCAGCCGTAAAGACGAAGGCGAAGATGACGACGAAAAGGCGTTAGGTGAAGGGGAGGGGTCTGGTGGGGAAAGCCTGAAGCTCTTTGGGGTTAGGTTGAGCATAAGCCATGGCACCACCTCCACCGCCAAGAGAGGACCCGAAGACCAAATCGGGTGTGGTGGTCCTCACTCTAATAAGCAGCTGAAAACTGTTGACTTTGTTTCACCTGTGATGATGACGAGCAGCAAGGTCTGCAACTGA 828 0.5302 MSSQRSVPAPFLTKTYQLVDDPATDDVISWGESGNTFVVWKHADFAKDLLPIYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTDIKRRKPVVQSLAQAPAASNSGGDEMGSSSTSNLGTVETTSSQVANLSGENEKLRKDNEMLSWELAQAKKQCEELISFLKEHVKMGPDQIHRIMRQGSCGSSRKDEGEDDDEKALGEGEGSGGESLKLFGVRLSISHGTTSTAKRGPEDQIGCGGPHSNKQLKTVDFVSPVMMTSSKVCN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2140 275 Coils Coil 132 166 - -
Acco11g2140 275 MobiDBLite consensus disorder prediction 108 141 - -
Acco11g2140 275 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g2140 275 MobiDBLite consensus disorder prediction 190 221 - -
Acco11g2140 275 SUPERFAMILY "Winged helix" DNA-binding domain 8 100 IPR036390 -
Acco11g2140 275 MobiDBLite consensus disorder prediction 107 141 - -
Acco11g2140 275 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g2140 275 Gene3D - 3 101 IPR036388 -
Acco11g2140 275 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g2140 275 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g2140 275 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g2140 275 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 199 IPR027725 -
Acco11g2140 275 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g2140 275 FunFam Heat stress transcription factor B-4 3 101 - -
Acco11g2140 275 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2140 Acco-ChrAcco11 35369068 35371579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2140 2 275 HSF AT4G36990 52.083 4.62e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco11g2140 HSF_DNA-bind 2.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2140 11 35369068 35371579 Acco12g1967 12 31147045 31149381 CCT
Acco11g2140 11 35369068 35371579 Acco11g2140 11 35369068 35371579 ECH