Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2129 ATGTCTCTCTTGGACGTGGACATGAACAAATCTTCAGGGAGTGAAAGCAGTGGCATGGACATGATCTCCATGATGATGCAAATGGAGAAGTTTTCTGCTGATCAGTTCTGCGATCCTTTCTTTAACAATCCCACTGATTGCCCTGAAGCTACTGACTCTGCTAATATTGCCGCCACATTCCTCGACCCTAACGAGGCTCCTGATTTTGTCAACACTAGTTCAATTATTCAACAACCCATGGCACCACCGCCATCATTTCTTCACCATCAACCTCAGTCACCGGACGATGTTCCTCCAACGAGGCCCAGGAATAAATATAATCCGAACAACACGTCATATACTAACTACGCGTGTAGTTCAGAGAAGAGGAATTCAATGGCGGCGATGAGAGAGATGATATTCAGGATAGCGGTGATGCAGCCGATTCATATAGACCCAGAATCGGTGAAGCCGCCGAAGAGGAAGAACGTGAAGATATCGAAGGACCCCCAGAGCGTGGCGGCGAGGCACAGGAGAGAGAGGATAAGCGAGAGGATAAGGATTCTGCAGAGATTAGTGCCGGGAGGGACGAAAATGGACACGGCTTCTATGTTGGAGGAAGCCATACATTACGTCAAGTTCTTAAAGAAACAAGTGCAGACTCTGGAACAGGCAGGGGCTAGTAGTACTAGTAGGGCCATTGGTGTTCCTTTTTCTGGCACCTCATCAAGTACTGTCAATGTCAATTATTCTGATTTCATGGTTAAGGGTCGCCAATTACCAGCAGCTCCTCCAATGGTGGGTTCTATGCACATGCTATGA 801 0.4744 MSLLDVDMNKSSGSESSGMDMISMMMQMEKFSADQFCDPFFNNPTDCPEATDSANIAATFLDPNEAPDFVNTSSIIQQPMAPPPSFLHHQPQSPDDVPPTRPRNKYNPNNTSYTNYACSSEKRNSMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLEEAIHYVKFLKKQVQTLEQAGASSTSRAIGVPFSGTSSSTVNVNYSDFMVKGRQLPAAPPMVGSMHML 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2129 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Acco11g2129 266 Gene3D - 158 226 IPR036638 GO:0046983
Acco11g2129 266 SMART finulus 165 214 IPR011598 GO:0046983
Acco11g2129 266 MobiDBLite consensus disorder prediction 146 171 - -
Acco11g2129 266 MobiDBLite consensus disorder prediction 75 116 - -
Acco11g2129 266 Coils Coil 198 218 - -
Acco11g2129 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 235 IPR045843 GO:0003700|GO:0006355
Acco11g2129 266 MobiDBLite consensus disorder prediction 147 171 - -
Acco11g2129 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 218 IPR036638 GO:0046983
Acco11g2129 266 FunFam BHLH transcription factor 162 226 - -
Acco11g2129 266 Pfam Helix-loop-helix DNA-binding domain 169 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2129 Acco-ChrAcco11 35298075 35298875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2129 117 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 81.034 2.13e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco11g2129 HLH 4.3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2129 11 35298075 35298875 Acco11g2129 11 35298075 35298875 ECH