Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2121 ATGGCCGATGAACAGCCTTCAACGACTTCTAAACGAAGGGGAAGAGGAACTGAGACATCGGCGCGTTCCGAAGCTTTGGAACGTCTAAAAGCTCGTCTCCGTGGCGGTCGTCGTTCAGATGGCGATGGATATCAAATTAAGTTAGATAATCCCGTTTATGACACTGTCGAAGAGGACGAGTACAATGCTCTCGTCGCCAAGCGCCGCGAAGAAGCCCGAGGCTTCATTGTGGACGATGACGGTCTTGGGTACGGGGACGAAGGGGAGGAGGAGGATTGGTCAAAAGCTGGGTTCACCCTGTCCTCCGACGAATCCGATGGCGAAACAGAAAAGCCCAAAAGGAAGAGACAAGAAAAGAAAGATCCTCAACCTAAAAGGCCACCGTCTTCGCTATCGGCTGCTGCAACGATGATAGGGGCGCAGAGGTTGTCATCGATATTCACTTCGTCAGTTTTTAAGAAAACCCGGGATGATAAGGCTAAAGGCTTTTCTTGTGATAGCATTGTTGATGATGTTATCGCAGAGTTTGCACCGGATGAGACTGATAGACTAAGGCGCAGACGCCGGCCAACAGATCCTTCATCAAGGGCGAACATCGCTCTGCCGATTAATAATGTTAAGAGCGAGGAACCAGCGATTGGATGTCTTGATCCTATGGGAGGTCCTTTGTCGTCGGATGCTGCCGCAAATGGCAATTATGATTCTACCAGAGTTGTGAAAAATGATGGTTATGCCTTGGTTCCTGAACGAAACTACGGAGGAATCAAAGTAGAGGCAACTACTAAAGAGTCAGAAGATGGGAGAAATATTAATTCCGACGATGGTCTGGCATCAATCTTGCAAACTCATTGTGGTCCAACTAACGGAGACGTGACTGGAGAGAAAATGTTGAAGGACGCTGAGATGAAAGCTATAAAAACAGAGGAGAAGGAGGTATTTCCTCTGAATGCGAAAGTTAAAGAAGACGACCCTGCACTGAGTGCGACTATCGGTTGGCAGGCAGCAAAGAGCGGGGGCGACGTCAATGTTGCTGATTCAAAGTTGGCGGACGAACCTTTAAATAGTGAAGAAAACTTAGAGTTCGATCTGGAGGCTGATGGGTCGCTGCCTTTCTATATACTTGATGCCCATGAGGAATTCTATGGAGCTAACATGGGTACCCTTTATTTGTTTGGGAAGGTCAAATCAGGTAATTCGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCGTCCTTTACATCACACTGATGAGATGATGGAGCTTGAGAAGGAAGTTGAAGAGTCCCGGATTTCTCGTACAGACTTTCATAAAAGGCTGCAAGATATGGTGTCTGGTTTAAAGAATGAGATAGCAAAACAGCTGTTAGATCTTAACGCTTCAACTTTTAGCATGAAACCTGTTAAGAGGAAATATGCATATGAACGCTCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATCAACTATCCATTCAAGGATCCACCTCTTCCAGTAGATCTGAAAGGAGAGAGTTTCTGTGCTGTTCTAGGAACTCATTGCAGTGCTTTGGAGCTTTTTCTAATTAAAAGAAAGATAAAGGGGCCTTCATGGCTGCTACTTTCAAACTTTTCTTCCCGCCAGACACCCCAAAGGGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCTCCTAAAGACATAAGGATTTCAACTTCCTCCAAATCCAGTTTTGAGATTCCTCCCGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAACAAAACTTAAACGAGATTGTCTCTGCATCCATTGTTTGCTGCCGCAGGGTCAAGATTGACACTCCCATGTTGGCTTCAGAATGGAAGAGACCTGGACTACTGACCCATTTTACTGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGATTCAATAAGGAAGTTACAGACCGAAACACAAAAGCTGGATCAAATGTTCTGTGTGTTGAGAGCAGTGAAAGGGCTTTACTAAACCGCCTGATGATAGAATTGTACAAGTTGGACAGTGATGTTCTTGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCCAAAGTGCCAAGCAGCATGTGGTCCAAAACAGGCCGCCTTAAACGGTCTGTGATGCCTAAACTTACCAGAGTAAGCACTGTTTTTGGTTCTGGAGCTACTCCTGGTATCATGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTATTAAAGGAGGTTAGCTACTCTTTATCTCAACTATCAAAATCTCAGCTGAATAAAGTTCGAAAGGAAGTTGCTCCACATGATGTTCCAAAAATGTTCCAATCAGCAGAATCCCTCATGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACGCGTCAGCTGACTAATATTAGTGGTAATTTGTGGGGAAAAACACTTCAGGGTGCAAGGGCACAGAGAGTGGAGTATCTTCTGTTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGATTCCTCCCCATGCCAAAGAAACAAAATTGACGAAACGCAGAGGAACTCATGGTGTCGAGGATGTCAGCTTTGACGAAGTTATTGACAATACGAACTATGACAATGATGCTCCTGACAATGATCATGGTAAAAGTAAGAAGACCCCGTCCTATGCTGGAGGGCTGGTCTTGGAGCCTAAAAGGGGTTTATATGACAAATATATATTGCTCTTGGACTTCAATAGTCTTTATCCTTCTATAATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTACAGATGGATCTTTTCCTCGTCTTCCATCTAGTAAAACAACTGGAGTTTTGCCAGAGTTGCTGAAAAATTTGGTTCAAAGGAGGAGAATGGTGAAGTCATGGATGAAAACTGCGTCTGGTCTTAAAGTTCAGCAACTGGACATTCAGCAACAAGCACTTAAGCTTACTGCAAACAGTATGTACGGATGCCTGGGATTTGCCAATTCAAGATTTTATGCGAAACCGTTGGCCGAGCTTATAACCTTGCAAGGAAGGGAGATATTACAAAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTGGAGGTGATCTATGGCGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAAGCAAAAGCAATGGCTGGAAAAGTGATTCAAGAGGTTAACAAGAAATATAGGTGCTTGGAAATTGACCTTGATGGTTTGTACAAGAGAATGCTACTGCTGAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAGTTGAAAGATGGCTCGCCATATGAGGTTATTGAACGTAAGGGTCTGGACATTGTTCGTCGTGACTGGAGTCTATTATCTAAAGAAATAGGAGATTTTTGCCTAGGCCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTCGAATCAATTCACAGCTCTCTTCGTAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTGCCGTTAGAGAAATATATCATCACTAAGACGTTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAAATCAACCGCACGTTCTTGTGGCACAAAGGTTGAAGCAAAAGGGCTACTCCACTGGTTGCTCTGTTGGTGATGCAATCCCCTACATTATTTGCCATGAGCAGGGCAGTAATTCAAGCAGCGGAACAAGTATTGCTCAACGTGCTAGACATCCTGAGGAACTAAAACAAGAACAAGGGAAATGGATGATTGACATTGATTATTACTTATCACAACAGCTTCATCCTGTTGTATCACGTCTCTGTGCATCAATTCAGGGCACGAGTCCGGAAAGGCTGGCTGATTGTTTAGGGCTTGATGCATCAAAAGTAGAACTGCTTTCCTACTGTTTTCAACACAAGTCAAGTGAAGCCTCCAATGGTGATCCTTCAAATTCACTCTTGTTTGCTGCTGATGACAAAGAGAGGTATGAAGGATGTGAGCCGTTGGTTCTGTCATGTCCTAGCTGCTCTGGTACTTTTGACTGTCCTCCCATCTTTAAATCTGTTTGTGAAAGTGAAAAGCCAACAAGCTCCGGTATGGAGGAATCGAGTTATAATTTCTGGCGTAAGCTGCGCTGTCCTAAGTGCCCGGAAGAAGATGGTGTTGGCAGAATTTTTCCTGCAATGATTGCCAATCAGGTCAAAAGGCAAGCAGATGAGTATATTTCAATGTACTACAGAGGCTTGTTAATGTGTGACGATGAAACTTGTAAGTATTCAACACGAAGTATCAACCTCCGGCTGGTTGGTGATTCTGAAAGAGGGACTGTTTGTCCAAATTACCCTCGCTGCAATGGGCGTCTACTAAGACAGTACACGGAGGCAGACTTGTACAAACAGCTCTCGTATTTTTGCCATGTGTTGGATACTGTTTCCTGTATAGAAAAGATGGACGTTAAATCTAGGATACCGCTTGAGAAAGAGTTGTCGAAAATTAGGCCAATGGTTGATCTGGCAGCATCAACGATACAGAAGATTCGAGATCGGTGTGCCTTTGGGTGGGTCCAGATTCAGGACTTGGTCGTCACAGCTCTTCCAAGAAATTTTGGTGAGTTGATGATATCATCATCTTTCTTCTGCGGTGTGATTGAGTTTCCATTGAAGATGTGGAGTAGAAGCTGCCGTATTACAACTTTGTGGCAGTACAGGTCGGCAATTTTTTGGGAGGCCTAA 4818 0.4365 MADEQPSTTSKRRGRGTETSARSEALERLKARLRGGRRSDGDGYQIKLDNPVYDTVEEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGETEKPKRKRQEKKDPQPKRPPSSLSAAATMIGAQRLSSIFTSSVFKKTRDDKAKGFSCDSIVDDVIAEFAPDETDRLRRRRRPTDPSSRANIALPINNVKSEEPAIGCLDPMGGPLSSDAAANGNYDSTRVVKNDGYALVPERNYGGIKVEATTKESEDGRNINSDDGLASILQTHCGPTNGDVTGEKMLKDAEMKAIKTEEKEVFPLNAKVKEDDPALSATIGWQAAKSGGDVNVADSKLADEPLNSEENLEFDLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKSGNSYQSCCVVVKNMQRCVYAIPSRPLHHTDEMMELEKEVEESRISRTDFHKRLQDMVSGLKNEIAKQLLDLNASTFSMKPVKRKYAYERSEIPAGENYVLKINYPFKDPPLPVDLKGESFCAVLGTHCSALELFLIKRKIKGPSWLLLSNFSSRQTPQRVSWCKFEVIVDSPKDIRISTSSKSSFEIPPVVVTAINLKTIINEKQNLNEIVSASIVCCRRVKIDTPMLASEWKRPGLLTHFTVVRKLDGGIFPLGFNKEVTDRNTKAGSNVLCVESSERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKTGRLKRSVMPKLTRVSTVFGSGATPGIMSCIAGRLLCDTYLCARDLLKEVSYSLSQLSKSQLNKVRKEVAPHDVPKMFQSAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPPHAKETKLTKRRGTHGVEDVSFDEVIDNTNYDNDAPDNDHGKSKKTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTTGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQLKDGSPYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLRKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDAIPYIICHEQGSNSSSGTSIAQRARHPEELKQEQGKWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKVELLSYCFQHKSSEASNGDPSNSLLFAADDKERYEGCEPLVLSCPSCSGTFDCPPIFKSVCESEKPTSSGMEESSYNFWRKLRCPKCPEEDGVGRIFPAMIANQVKRQADEYISMYYRGLLMCDDETCKYSTRSINLRLVGDSERGTVCPNYPRCNGRLLRQYTEADLYKQLSYFCHVLDTVSCIEKMDVKSRIPLEKELSKIRPMVDLAASTIQKIRDRCAFGWVQIQDLVVTALPRNFGELMISSSFFCGVIEFPLKMWSRSCRITTLWQYRSAIFWEA 1605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2121 1605 Coils Coil 1099 1119 - -
Acco11g2121 1605 CDD DNA_polB_alpha_exo 584 835 - -
Acco11g2121 1605 NCBIfam DNA polymerase (pol2) 52 1303 - -
Acco11g2121 1605 SUPERFAMILY DNA/RNA polymerases 868 1320 IPR043502 -
Acco11g2121 1605 MobiDBLite consensus disorder prediction 1 44 - -
Acco11g2121 1605 MobiDBLite consensus disorder prediction 1 53 - -
Acco11g2121 1605 SUPERFAMILY Ribonuclease H-like 366 872 IPR012337 -
Acco11g2121 1605 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1557 - -
Acco11g2121 1605 FunFam DNA polymerase 411 537 - -
Acco11g2121 1605 CDD POLBc_alpha 918 1321 IPR045846 GO:0003887|GO:1902975
Acco11g2121 1605 FunFam DNA polymerase 983 1032 - -
Acco11g2121 1605 Pfam DNA Polymerase alpha zinc finger 1352 1555 IPR015088 GO:0003887|GO:0006260
Acco11g2121 1605 Pfam DNA polymerase family B, exonuclease domain 400 778 IPR006133 -
Acco11g2121 1605 FunFam DNA polymerase 1351 1545 - -
Acco11g2121 1605 Gene3D - 371 570 - -
Acco11g2121 1605 Gene3D - 584 895 IPR036397 GO:0003676
Acco11g2121 1605 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Acco11g2121 1605 Gene3D - 411 537 - -
Acco11g2121 1605 MobiDBLite consensus disorder prediction 903 925 - -
Acco11g2121 1605 MobiDBLite consensus disorder prediction 75 132 - -
Acco11g2121 1605 SMART polmehr3 584 1085 IPR006172 GO:0000166|GO:0003676|GO:0003887
Acco11g2121 1605 PRINTS DNA-directed DNA-polymerase family B signature 942 955 IPR006172 GO:0000166|GO:0003676|GO:0003887
Acco11g2121 1605 PRINTS DNA-directed DNA-polymerase family B signature 1018 1030 IPR006172 GO:0000166|GO:0003676|GO:0003887
Acco11g2121 1605 PRINTS DNA-directed DNA-polymerase family B signature 1071 1079 IPR006172 GO:0000166|GO:0003676|GO:0003887
Acco11g2121 1605 FunFam DNA polymerase 584 898 - -
Acco11g2121 1605 FunFam DNA polymerase 1149 1335 - -
Acco11g2121 1605 MobiDBLite consensus disorder prediction 104 125 - -
Acco11g2121 1605 Gene3D Helix hairpin bin 981 1032 - -
Acco11g2121 1605 Gene3D - 1149 1319 IPR042087 -
Acco11g2121 1605 ProSitePatterns DNA polymerase family B signature. 1073 1081 IPR017964 GO:0000166|GO:0003676
Acco11g2121 1605 Gene3D DNA Polymerase alpha, zinc finger 1351 1544 IPR038256 -
Acco11g2121 1605 Gene3D Palm domain of DNA polymerase 911 1136 IPR023211 -
Acco11g2121 1605 Pfam DNA polymerase family B 843 1305 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2121 Acco-ChrAcco11 35220698 35232266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2121 1 1557 Core DNA Replication Machinery Family AT5G67100 60.712 0.0 1865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2121 11 35220698 35232266 Acco11g2121 11 35220698 35232266 ECH