Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2120 ATGGGGGATATGTATAGCTATGATGGTAATGATTTCCTGGCGTCTTCAGCCTCATCTTCACCTCAAGACGAGATCTCGCTTTTCCTGCGCCAGATTCTCCTTCGTTCATCCTCCTCCTCGTCAGCTTCATCGTCGCTGCTTGTGACCGACACGGTGAAAAACGCCCACACCTCGACGGCTGGACACTGCAGTTCCCACGCCACGCTGGAGAATGCTCACGCTTCTGACCCATCATCACTTTTCCAAGATGGGATCTCCCTCGTTGCTAATTCCTCCGTTGGAGTAGGAGCTCCAAACGATGGTTTTCTTTCCTCCTCGGGGACTAATACGTTGGCCAATATGAAGGGTGGTTCTGCTGTAAACATACCCTCGTCTTATTTTGGAGTAAGTGAGAATGAGTTCGATGAGTACGATTGCGAGAGTGAGGAGGGGATCGAAGCATTGGTGGATCAGCAGCCGATGAAGTCAGTTCCTCCGAGGAGTTCATCAAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGAAGCAGGATCAACGAAAAAATGAAGGCATTGCAAAACCTGATTCCAAATTCAAACAAGACTGACAAGGCCTCGATGCTGGATGAAGCAATTGAATACCTGAAACAACTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCGTGCTTTGTGCTTTTCTGAAGACTTGCAGGTTCAGCAATTTAGTCAGATGAGATCTGAGCTCAACGAAGAAAACAGTTCTTTGCCTTCAAACACGGAAACTACTCTGCCTTTGACCCAAGAAAATCCCTTGCTCTATGAGTCCAAATCCAGTCTACCTGACAAACCCAATACACAGGACCAACCGCTAGTGCCCTCTCCATCATATACAATCAACCCAGAAACTTATTTTGTTCTAGATTCCCCAATTCTGCCAAATATAAGATCTCTTCCTCAGAAAAGAACTTCTGAGATGCGTAGCAATGAGATATTGCGGCACCAGCAATTATATGCGAGCCATTCAGATACTAATCCTTTAGGTGGTTCTCAAGTACCACACACCTTTGATACGCAAACACCTGAACAGAAGGGCAAGGACTTGGAAACTGGCGCTGTGGGAAAAGATCAGTTGGCATCGATCTTGAGAAATAGCGTAAACAACGTTAATATTACGTCACGGTTTCGGAGATTACAGGCGGGAGAAAGTATATGCGAAGACGACATCAAGACAGAAAAACCTAGTTTGTGA 1260 0.4579 MGDMYSYDGNDFLASSASSSPQDEISLFLRQILLRSSSSSSASSSLLVTDTVKNAHTSTAGHCSSHATLENAHASDPSSLFQDGISLVANSSVGVGAPNDGFLSSSGTNTLANMKGGSAVNIPSSYFGVSENEFDEYDCESEEGIEALVDQQPMKSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLRALCFSEDLQVQQFSQMRSELNEENSSLPSNTETTLPLTQENPLLYESKSSLPDKPNTQDQPLVPSPSYTINPETYFVLDSPILPNIRSLPQKRTSEMRSNEILRHQQLYASHSDTNPLGGSQVPHTFDTQTPEQKGKDLETGAVGKDQLASILRNSVNNVNITSRFRRLQAGESICEDDIKTEKPSL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2120 419 MobiDBLite consensus disorder prediction 345 370 - -
Acco11g2120 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 227 IPR036638 GO:0046983
Acco11g2120 419 Coils Coil 206 226 - -
Acco11g2120 419 MobiDBLite consensus disorder prediction 345 362 - -
Acco11g2120 419 MobiDBLite consensus disorder prediction 165 179 - -
Acco11g2120 419 MobiDBLite consensus disorder prediction 249 300 - -
Acco11g2120 419 MobiDBLite consensus disorder prediction 151 179 - -
Acco11g2120 419 Gene3D - 162 226 IPR036638 GO:0046983
Acco11g2120 419 SMART finulus 173 222 IPR011598 GO:0046983
Acco11g2120 419 CDD bHLH_AtPIF_like 167 229 IPR047265 -
Acco11g2120 419 FunFam Basic helix-loop-helix transcription factor 162 225 - -
Acco11g2120 419 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 18 345 IPR031066 -
Acco11g2120 419 Pfam Helix-loop-helix DNA-binding domain 171 217 IPR011598 GO:0046983
Acco11g2120 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2120 Acco-ChrAcco11 35217283 35219902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2120 4 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 41.779 5.56e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco11g2120 HLH 5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2120 11 35217283 35219902 Acco11g2120 11 35217283 35219902 ECH