Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2106 ATGTGGGATCTGAATGACTCGCCAGATTGGAGAAAGGACGAGGAATCCGAAGGTTGCTCTTCCTTGAAGACATCCATGGACGGAGACGACGACAAAGGGAAACGGGTCGGATCTATGTCCAATTCAAGCTCATCTGCGGTCGTCATCGAGGACGGATCGGAGGAGGAAGACGGCGAGAGGAGCAGAACAGTGAAGAAGAAAAGCTGCAGCAAGATATTCGGGTTCCTTGTCAACCAGGACGAATCCATGGACACTGACCCGCTCGTGACCCGGCAGTTTTTCCCAGTGGAGGAGGAGGCGGCGGCCGTGTCATCGGTCGGTGGAGGGAGCACGGCCTTCCCTCGGGCTCACTGGGTTGGCGTGAGGTTCTGTCAGCCGGAACCAGTCTCCGCCGCTGCTGGTGGCAGAGGGAAATCCGTCGAAGTGTCGTCGCAGCCGATAAAGAAAAGCCGGCGAGGACCAAGGTCAAGAAGCTCTCAGTATCGGGGAGTCACGTTTTACAGAAGAACAGGTCGTTGGGAGTCACATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCGTATGATAGAGCGGCCATTAAGTTCCGAGGAGTAGAGGCCGACATCAACTTCAACATTGAAGACTACGAAGAAGACTTGAAGCAGATGAGCAATTTAACGAAGGAAGAGTTTGTCCACGTACTTCGTCGACAAAGCACTGGGTTCCCCAGAGGAAGCTCCAAATATAGAGGCGTAACTTTGCACAAATGTGGAAGATGGGAGGCTCGAATGGGTCAATTTCTTGGCAAAAAGTACGTTTATCTTGGTTTGTTTGACACGGAGGCTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGTAATGGCAAAGAGGCCGTCACTAATTTCGATCCCAGCATCTACGAGAATGAGCTTAATTCTGAATCCTCGGGTAACGCTGCGGATCACAATCTGGACTTGAGTCTGGGCAATTCGAGCTCAAAGCAAGGCAGTATTAGTCAAGCACTGGGAAATGATGCCCATAACAGTGGAATGGATCATCAGCAAATGGCATCGGAGTCTAGTTGGCGGAACAATGGAGGATTACTCAGGCCTAAGTCGACACTGCTGGATGGTCAAACTCAGCTTCAATCTGCTACATCAAGAGAAATGCAAAGATTTGGCGGCTACAGGACAACTAGAGAGCCGCAAATGCTCAACAGTTTTGCTCCATCCCATCTTCACCCACCAAGCTTTCATTTTCCAAGCAGCAGCAGTGAAGGGCGGATTGGGAGTGATCTTTCACTGTCAATGAGTGATCATCATCACCATCACCAACTGGGGCCTCCTCCTCCTCTTCATCAGGCTCATTATATAGCAACTGCTGCAGCATCATCAGGATTCCCAACGCAGATTAACAGACTTTCACAAGGATGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCAACTGA 1494 0.5033 MWDLNDSPDWRKDEESEGCSSLKTSMDGDDDKGKRVGSMSNSSSSAVVIEDGSEEEDGERSRTVKKKSCSKIFGFLVNQDESMDTDPLVTRQFFPVEEEAAAVSSVGGGSTAFPRAHWVGVRFCQPEPVSAAAGGRGKSVEVSSQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEAEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGNAADHNLDLSLGNSSSKQGSISQALGNDAHNSGMDHQQMASESSWRNNGGLLRPKSTLLDGQTQLQSATSREMQRFGGYRTTREPQMLNSFAPSHLHPPSFHFPSSSSEGRIGSDLSLSMSDHHHHHQLGPPPPLHQAHYIATAAASSGFPTQINRLSQGWLQKNGFHTLMRPN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2106 497 MobiDBLite consensus disorder prediction 316 397 - -
Acco11g2106 497 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 397 - -
Acco11g2106 497 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Acco11g2106 497 Pfam AP2 domain 251 300 IPR001471 GO:0003700|GO:0006355
Acco11g2106 497 SUPERFAMILY DNA-binding domain 159 217 IPR016177 GO:0003677
Acco11g2106 497 CDD AP2 251 311 IPR001471 GO:0003700|GO:0006355
Acco11g2106 497 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Acco11g2106 497 SMART rav1_2 252 315 IPR001471 GO:0003700|GO:0006355
Acco11g2106 497 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Acco11g2106 497 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700|GO:0006355
Acco11g2106 497 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700|GO:0006355
Acco11g2106 497 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700|GO:0006355
Acco11g2106 497 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700|GO:0006355
Acco11g2106 497 MobiDBLite consensus disorder prediction 130 160 - -
Acco11g2106 497 MobiDBLite consensus disorder prediction 423 438 - -
Acco11g2106 497 MobiDBLite consensus disorder prediction 1 63 - -
Acco11g2106 497 MobiDBLite consensus disorder prediction 1 36 - -
Acco11g2106 497 FunFam AP2-like ethylene-responsive transcription factor 251 311 - -
Acco11g2106 497 FunFam AP2-like ethylene-responsive transcription factor 159 218 - -
Acco11g2106 497 CDD AP2 160 217 IPR001471 GO:0003700|GO:0006355
Acco11g2106 497 SUPERFAMILY DNA-binding domain 251 311 IPR016177 GO:0003677
Acco11g2106 497 MobiDBLite consensus disorder prediction 412 459 - -
Acco11g2106 497 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2106 Acco-ChrAcco11 35055367 35057897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2106 1 496 AP2-EREBP Transcription Factor Family AT4G36920 54.241 1.02e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Acco11g2106 AP2 2e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2106 11 35055367 35057897 Acco12g1946 12 30913219 30916201 CCT
Acco11g2106 11 35055367 35057897 Acco11g2106 11 35055367 35057897 ECH