Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2103 ATGGACGACATGGCTGCCTACTACGCACAATCCCAATCTTCGACTCATCATACTTTTCCATATTATCAACATCCTCATCCGTCGTCGCTAGCGGTGGTGCCACCACCTCCTGGTGCGGCTCCTCCCGACCCCCACCATCTTCCTTCGCAATATGGGTCCTACCAGCAACCAATGTTTGCTTCTTACGGCCCTCCTAATCCTATTCAGTATTCCGCCGACGAGGTTCGGACACTCTTCGTCGCCGGTCTTCCCGAGGATGTGAAGCCTCGCGAAATCTACAATTTGTTTCGAGAGTTTCCCGGTTACGAGTCATCACATCTTCGGAGCCCCACTGAATCGTCGCAGGCTTTCGCTTTTGCTGTATTCACTGATCAGCAGTCTGCACTCATGGCAATGCATGCATTAAATGGGATGGTCTTTGACCTTGAAGAGGGGTCAACTCTATATATAGATTTAGCAAAATCCAACTCGAGGTCCAAGCGCACAAGAATAGATGATGAAATTGTTGGCTCAGATAAGAAGGCTAGAGGATCTTCTTTTTCAAGGGCAACTCCTGATTCTGGTGTTGGCAGCATACACATGCCTGGAATGGGTAATTCTGCTTACAACACAAACACGTATGGTTATCCATCTGCACAAAGCCAATGGTATGCTGATGATAAGGCTTTTAATGACAGCGCAGCAGCAAATTTGAATAACTCCTCTCGCATTCCACAAAATGTGACCCCATGTCCAACTTTATTTGTGGCTAACCTGGGGCCATCTTGTACCGAACAAGAGCTAATACAAGTATTTTCCAGATGTCCTGGATTTTTGAAACTGAAAATGCAGAGCACATATGGAGCTCCTGTTGCATTTGTTGATTTTCAGGATGTTGCCGGTTCAACTGCAGCTCTAAACAGTCTACAAGGCACGGTTCTTTATTCCTCAAGTGCTGGCGAGGGAATGCGGTTAGCATATGCAAAATCACGGATGGGTATGCGAAAGAAGCCGAAATTGAAGATTGGGTGTATCGATTCTATGCCTATACCCAACACGGTATCTCCCCATGGCCTTTTGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCTGGGTATCCATCCAGTCCTTCCTTCTCAATGCTTGGGTATCCATCCAATGCATTCTTTTTGATCTTGGGAGGAGTCCCACGAGGGTGTCTCCAAAAGGCATCACTCTTTGCCCTCTTCGTCTCTCTTCTCACTCACTTCCTCTATTCCTCATGAACATTCACTCTCTGTCCCTCCCTTTTGACCAGTCTCGCCGAGAGAGAGGGACGGACGGCGGCAGTGAAGCAGCGGGGAGAGAGATGCCGACCAGGAAAAGAGGGGCCGTTCAACTTGAAGGAGAGAGAAGATACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCCGAGATTCGAGAGCCCAATAAACGCTCTAGGATTTGGCTCGGTTCCTACTCCACTCCCGTCGCCGCAGCCCGGGCCTACGACACCGCCGTTTTCTATCTGAGGGGCCCATCGGCCCGCCTTAATTTTCCTGACCTCTTAGAAGGCGGCGCCGTTGGCGGCTGCGACTGCGACATGTCGGCGGCTTCGATTAGGAAGAAAGCGACGGAGGTCGGTGCCAGAGTCGACGCGATTCAGGCCGCTCTCCACCATCACCACCATGCCTCGGTGGCGCCGGAGATCATCTCACGCAGCGCAGGCGCCGGAGCCGGTTCCGGGGAATTTTTGGCGCGGGTTGATCTTAACAAGATACCAGAACCCGAGGATTCGGACTGCGACTGCGAGTGA 1800 0.5111 MDDMAAYYAQSQSSTHHTFPYYQHPHPSSLAVVPPPPGAAPPDPHHLPSQYGSYQQPMFASYGPPNPIQYSADEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSPTESSQAFAFAVFTDQQSALMAMHALNGMVFDLEEGSTLYIDLAKSNSRSKRTRIDDEIVGSDKKARGSSFSRATPDSGVGSIHMPGMGNSAYNTNTYGYPSAQSQWYADDKAFNDSAAANLNNSSRIPQNVTPCPTLFVANLGPSCTEQELIQVFSRCPGFLKLKMQSTYGAPVAFVDFQDVAGSTAALNSLQGTVLYSSSAGEGMRLAYAKSRMGMRKKPKLKIGCIDSMPIPNTVSPHGLLPLKASFLLNAWVSIQSFLLNAWVSIQCILFDLGRSPTRVSPKGITLCPLRLSSHSLPLFLMNIHSLSLPFDQSRRERGTDGGSEAAGREMPTRKRGAVQLEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLEGGAVGGCDCDMSAASIRKKATEVGARVDAIQAALHHHHHASVAPEIISRSAGAGAGSGEFLARVDLNKIPEPEDSDCDCE 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2103 599 CDD AP2 458 517 IPR001471 GO:0003700|GO:0006355
Acco11g2103 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 155 IPR000504 GO:0003723
Acco11g2103 599 SMART rrm1_1 77 151 IPR000504 GO:0003723
Acco11g2103 599 SMART rrm1_1 246 315 IPR000504 GO:0003723
Acco11g2103 599 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 447 595 - -
Acco11g2103 599 Pfam AP2 domain 458 507 IPR001471 GO:0003700|GO:0006355
Acco11g2103 599 SUPERFAMILY DNA-binding domain 458 516 IPR016177 GO:0003677
Acco11g2103 599 FunFam RNA-binding protein with multiple splicing 237 328 - -
Acco11g2103 599 Gene3D - 238 332 IPR012677 -
Acco11g2103 599 MobiDBLite consensus disorder prediction 173 192 - -
Acco11g2103 599 MobiDBLite consensus disorder prediction 425 447 - -
Acco11g2103 599 FunFam RNA-binding protein with multiple splicing 2 73 163 - -
Acco11g2103 599 Gene3D - 72 165 IPR012677 -
Acco11g2103 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Acco11g2103 599 FunFam Ethylene-responsive transcription factor 2 457 516 - -
Acco11g2103 599 SMART rav1_2 458 521 IPR001471 GO:0003700|GO:0006355
Acco11g2103 599 SUPERFAMILY RNA-binding domain, RBD 75 308 IPR035979 GO:0003676
Acco11g2103 599 ProSiteProfiles AP2/ERF domain profile. 458 515 IPR001471 GO:0003700|GO:0006355
Acco11g2103 599 PRINTS Ethylene responsive element binding protein signature 497 517 IPR001471 GO:0003700|GO:0006355
Acco11g2103 599 PRINTS Ethylene responsive element binding protein signature 459 470 IPR001471 GO:0003700|GO:0006355
Acco11g2103 599 Gene3D AP2/ERF domain 457 516 IPR036955 GO:0003700|GO:0006355
Acco11g2103 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 141 IPR000504 GO:0003723
Acco11g2103 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 309 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2103 Acco-ChrAcco11 35029883 35040613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2103 445 599 AP2-EREBP Transcription Factor Family AT5G67190 56.497 4.92e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco11g2103 RRM_1 5.1e-10 CL0221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2103 11 35029883 35040613 Acco12g1940 12 30832438 30832902 CCT
Acco11g2103 11 35029883 35040613 Acco11g2103 11 35029883 35040613 ECH