Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2080 ATGAATAACACGGTGGCCGCTAGGAGGGATATGGACCGGATTAAGGGTCCCTGGAGCCCCGAGGAGGACGAGGCCTTGCAGAAGCTCGTAGAGAAGCATGGCCCCAGGAATTGGTCCTTGATCAGCAAGTCCATTCCCGGTCGATCCGGAAAGTCTTGCAGGCTTCGCTGGTGCAATCAGCTCTCCCCTCAGGTCGAGCACAGGGCATTCACACCTGAAGAGGATGACACCATAATCAGGGCTCATGCCCGTTTCGGCAACAAATGGGCTACCATCGCTCGCCTGCTCTCCGGCCGAACTGATAACGCCATCAAGAACCACTGGAACTCTACCTTGAAGCGCAAGTGTTCATCCATGATGATCGATGACGCTGGTGCTGTCGGTGGATTCGATGGCAGTTTCAGCCCTCAGCCGCTTAAGAGGTCGGTCAGTGCCGGCGCCGCTTTACCCGTCTCGACTGGCCTTTGCATGAACCCACCCTCGCCGGGCAGCCCGTCTGGATCGGATGTGAGCGAGACCAGTTTTCCCGTTGCGTCTTCTTCTCAAGTCTATCGACCTGTCGCGAGAACCGGCGGGGTTCTACCTCCCGTAGAAACGACTTCATCTTCCAATGACCCTCCCACGTCATTATCCCTGTCTCTTCCCGGCGTAGACTCCTCTGAAGTCTCTAATCGGCCTGCAGACCCAGCACATACTGCACCACCGGCCAACAGTACGCGCTTGTTATCAGTAATGGCGCCGACGCCCACTCCGGCCCTGCCGCCCGCCCCATCTCCGGCTCCGACATCAGCTCCGATGTCGGTGTCGCAGCAGGTTCATTTGGGTAGGGATGAGCGAAGTGGCGAGAGAGGTTCGAATCAGAACGGATTCTTAGGTTTTAATTTCAGTGCAGAGTTGCTAGCTGTGGTGCAAGACATGATAAGGAAGGAGGTGAGGAGTTATATGGCGGGGATGGAGCAGCAGAATGGGGTGTGTTTTCAGGCATCTGATGGATTTCGAAACGCTTCGGTGAAGCGTATTGGAATTAGCAGGATCGATTCATGA 1044 0.5594 MNNTVAARRDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMMIDDAGAVGGFDGSFSPQPLKRSVSAGAALPVSTGLCMNPPSPGSPSGSDVSETSFPVASSSQVYRPVARTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRPADPAHTAPPANSTRLLSVMAPTPTPALPPAPSPAPTSAPMSVSQQVHLGRDERSGERGSNQNGFLGFNFSAELLAVVQDMIRKEVRSYMAGMEQQNGVCFQASDGFRNASVKRIGISRIDS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2080 347 CDD SANT 69 112 IPR001005 -
Acco11g2080 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
Acco11g2080 347 MobiDBLite consensus disorder prediction 195 220 - -
Acco11g2080 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Acco11g2080 347 SMART sant 66 114 IPR001005 -
Acco11g2080 347 SMART sant 14 63 IPR001005 -
Acco11g2080 347 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Acco11g2080 347 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Acco11g2080 347 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Acco11g2080 347 Gene3D - 68 124 - -
Acco11g2080 347 MobiDBLite consensus disorder prediction 248 262 - -
Acco11g2080 347 PANTHER MYB PROTEIN-RELATED 15 219 - -
Acco11g2080 347 CDD SANT 17 59 IPR001005 -
Acco11g2080 347 MobiDBLite consensus disorder prediction 157 186 - -
Acco11g2080 347 MobiDBLite consensus disorder prediction 154 287 - -
Acco11g2080 347 FunFam MYB transcription factor 15 66 - -
Acco11g2080 347 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Acco11g2080 347 FunFam Transcription factor MYB44 69 115 - -
Acco11g2080 347 Gene3D - 14 66 - -
Acco11g2080 347 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2080 Acco-ChrAcco11 34901352 34902395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2080 7 346 MYB Transcription Factor Family AT4G37260 50.279 3.21e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco11g2080 Myb_DNA-binding 1.2e-17 CL0123