Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2044 ATGATATGTGCGCATGAACCAGCCATACTCCTCCGTTTATCGCTAGTTTGCGCCCTCGTCGCGTTGCGTACACTGGTTGCGCGCCCTCCTAACGTGTGCATCCCCTCCTTCCCCATCTTCCCCATCGATACTATCGCTTCCCCCACTACCATCATCCACCTGGGCAACAAGCTCAATTACTATAAGGGAGAGATCTCGGATTTCTGTTGCCGAGCCATGTCCAAGGCGCGCGTCTATGCGGATATCAATGTCCTTCGCCCCAAGGAGTATTGGGATTACGAGTCTCTCACCGTTCAATGGGGTGAACAAGATGATTATGAGGTTGTGCGGAAAGTAGGAAGGGGAAAGTATAGTGAGGTGTTTGAGGGCATCAATGTTAATAGCAATGAGCGCTGCATAATTAAGATTCTGAAGCCAGTCAAAAAGAAGAAGATTAAAAGGGAGATTAAAATACTCCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATCAGCACTCAAAAACCCCCAGCTTAATATTTGAGTACGTCAACAGTACAGATTTTAAAGTTCTGTATCCAACCTTGACTGATTATGACATACGCTATTACATCTACGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCACAATGTCATGATTGATCATGAATTGCGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTCTATCATCCTGGAAAGGAGTACAATGTTCGTGTGGCTTCAAGATACTTCAAGGGTCCTGAACTTTTAGTTGATTTGCAAGGCTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTCCGCAAGGAACCATTCTTTTATGGGCATGACAACCACGATCAACTTGTGAAGATAGCTAGGGTGCTTGGAACTGATGAATTGAATGCTTATCTGAATAAGTATCATCTAGAGCTTGATCCTCAACTCGATGCACTTGTTGGAAGGCACAGTCGGAAACCCTGGTCTAAATTTATTAATGCAGATAATCAGCATCTTGTGTCTCCAGAGGCTATCGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTTACTGCAAGAGAAGCTATGGCGCATCCGTATTTCTCTCAGGTAAGGGCTGCAGAAAGTAGCAGAATGAGGACCCAGTGA 1218 0.4442 MICAHEPAILLRLSLVCALVALRTLVARPPNVCIPSFPIFPIDTIASPTTIIHLGNKLNYYKGEISDFCCRAMSKARVYADINVLRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQGYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIARVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2044 405 FunFam Casein kinase II subunit alpha 183 394 - -
Acco11g2044 405 SUPERFAMILY Protein kinase-like (PK-like) 79 395 IPR011009 -
Acco11g2044 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Acco11g2044 405 ProSiteProfiles Protein kinase domain profile. 106 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g2044 405 SMART serkin_6 106 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g2044 405 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Acco11g2044 405 Pfam Protein kinase domain 106 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g2044 405 Gene3D Phosphorylase Kinase; domain 1 106 182 - -
Acco11g2044 405 PANTHER CASEIN KINASE II SUBUNIT ALPHA 71 401 IPR045216 GO:0004674|GO:0006468
Acco11g2044 405 CDD STKc_CK2_alpha 87 391 IPR045216 GO:0004674|GO:0006468
Acco11g2044 405 Gene3D Transferase(Phosphotransferase) domain 1 183 391 - -
Acco11g2044 405 FunFam Casein kinase II subunit alpha 92 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2044 Acco-ChrAcco11 34625623 34630401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2044 104 394 Core Cell Cycle Gene Families AT3G48750 32.686 1.35e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Acco11g2044 Pkinase 2.5e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2044 11 34625623 34630401 Acco12g1888 12 30244780 30250085 CCT
Acco11g2044 11 34625623 34630401 Acco11g2044 11 34625623 34630401 ECH