Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2036 ATGAGTTGCAACGGCTGCCGAGTCCTTCGAAAAGGCTGCAGCAAGTCTTGTATTCTACGACCTTGCTTGCAGTGGATCGACACGCCCGAAGCCCAAGGACATGCCACTGTCTTCGTCGCCAAGTTCTTTGGCCGCGCGGGTCTCATGTCCTTCATTTCCAACGTTCCTGAAAATCAAAGGCCTGCTCTGTTTCAGTCCTTGTTGTTTGAAGCATGTGGGCGAACGGTGAATCCGGTGAACGGAGCGGTGGGGCTTCTGTGGACGGGAAACTGGCACGTGTGTCAGGCCGCCGTTGAGACGGTGCTTCGTGGCGGTGTATTAAGGCCCATTCCCGAGCTTCTCGGCTTGGATGCTTCTTCTCTGGCTGCCGACGAGGCGTCTGAGGCGGAAGTCGCCTGCACCGACATGTGGGGCATCAGGGATCCGAACCTGAGTTGCCGGTTCACGAATTCGCGATCTAACAAGTTCTCTTCCTGCAAACGCAAGCGATCGGATGAATCCAACCAGCCTCAGAAGGCCGATCTTGATCTCCGGTTGATGCCGAGTTTCCTGCGGAAAGTGTCAGGCTACAGCTGCAGGCCGGAAATCGGTGGGCCGGGTACGCCGTCGATGAACTCAGAAGAATCCGTGACGACGACGGTGTGCCTGGAAAGTGGACCTGGAGTTCACTACCCTCGTGCCGGAGAGCCCAAACTTCTCAACTTTTTCGCTTGA 714 0.5644 MSCNGCRVLRKGCSKSCILRPCLQWIDTPEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGVLRPIPELLGLDASSLAADEASEAEVACTDMWGIRDPNLSCRFTNSRSNKFSSCKRKRSDESNQPQKADLDLRLMPSFLRKVSGYSCRPEIGGPGTPSMNSEESVTTTVCLESGPGVHYPRAGEPKLLNFFA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2036 237 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Acco11g2036 237 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Acco11g2036 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2036 Acco-ChrAcco11 34562410 34563216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2036 1 237 AS2 family AT3G49940 58.431 3.87e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco11g2036 LOB 3.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g1876 12 30119884 30120723 Acco11g2036 11 34562410 34563216 CCT
Acco11g2036 11 34562410 34563216 Acco12g1876 12 30119884 30120723 ECH
Acco11g2036 11 34562410 34563216 Acco11g2036 11 34562410 34563216 ECH