Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco11g2022 | ATGGATGAATTTTTAATAGATGAACGCTTTACAAGAGTGAGATCTAAGAACTCGTCAAGAGAAGCTCTTGAAAAATGGAGGAATTTGTGCAGCGTAGTGAAGAACCCCAAACGACGCTTTCGTTTTACAGCCAATCTCTCCAAGCGAGACGAAGCGGAGGCGATGCGTCGTACCAATCAGGAGAAGCTGAGGGTTGCTATTCTGGTTTCCAAAGCGGCAATTCATTTTACTCAAGGTGTGTCACCAAGTGATTATGTTGTACCCGAGGATGTTAAAGCTGAAGGTTTTCAGATCTGCGCAGAAGAATTGGGGTCTATTGTTGAAGGTCATGATACAAAGAAGCTGCAATATCATGGCGGGGTTAATGGTCTTGCAGGCAAGCTTTCAGCATCAATCACCGATGGGCTTAGCAATGACACTAATCTTCTTAACAAGAGACAAAAGATTTATGGAATCAACAAATTTACCGAGAGTGAGGCTCGGAGTTTCTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATCCTTGGAGTATGTGCTCTTGTGTCTCTCATAGTTGGCATAGCAATGGAAGGATGGCCCCATGGGGCCCATGATGGTCTTGGAATTGTTGCAAGTATCTTGCTGGTTGTCTTTGTGACTGCAACAAGTGATTACCGCCAATCATTACAATTCAAGGACTTGGACAAAGAGAAGAAGAAGATCACTATTCAGGTCACAAGAAATGGTTATAGGCAGAAAATGTCAATATATGATTTACTTCCCGGCGACATTGTGCATCTTGCTATAGGAGACCAAGTCCCAGCAGATGGCCTGTTTCTTTCAGGATTCTCTGTGATGATCGATGAGTCAAGTTTAACTGGAGAGAGTGAGCCAGTGATGGTGAGTTCTGAAAATCCATTTCTTCTTTCAGGTACTAAGGTCAGAGATGGCTCTTGCAAAATGATGGTTACCACAGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCAACTCTCAGTGAAGGAGGAGACGATGAAACCCCACTGCAGGTGAAGTTAAATGGAGTGGCAACCATCATCGGGAAGATAGGCCTGTTCTTTGCTGTAGTTACTTTTGCAGTTTTAGTGCAAGGCCTTTTGACCCGTAAGTTCCAAGAAGGAAGCCTCTTGACCTGGTCTGGAGATGAGGCGTTGCAAACTTTGGAATTCTTTGCTGTTGCAGTTACAATCGTTGTTGTTGCTGTTCCAGAGGGGCTGCCATTAGCTGTCACATTGAGCCTTGCTTTTGCTATGAAGAAGATGATGAATGACAAAGCCCTTGTCCGAAACTTAGCAGCTTGTGAAACCATGGGATCAGCCACAACAATATGCAGTGACAAGACTGGAACATTAACTACCAACCGCATGACAGTTGTGAAAACATGCATTTGCATGAATAAGAAGGAAGTGAGCAATGATGCTTCTTCTACATTACCTTCTGATATCCCTGATTCTGCTGTGAAACTGCTGCTACAGTCAATATTTCTTAACACTGGAGGAGAAGTTGTGGTCAATGACAATGGAAAACGTGAGGTTTTGGGGACACCTACAGATACTGCAATATTGGAGTTTGGGTTATCTCTGGGTGGGAACTTTCAGGCAGTGAGAAATGCGTGTAAGCTTGTTAAAGTTGAGCCATTTAACTCTCTAAAGAAAAGGATGGGTGTAGTTGTGGAGCTTCCTGAGGGAGGAGGCTTGAGAGCCCACACTAAAGGAGCTTCTGAAATAATTCTGGCTGCCTGTGACAAGGTTATCAATTCCAAAGGTGAGGTTGTTCCACTTGACGAAGAATCTAGGAACCGTCTTACGGTTACAATAAACCAATTTGCAAGTGAGGCACTTAGAACTCTATGCATTGCCTACATGGACATGGAAAAGGGATTCTCACCTGAAGACCCGATTCCAGTTTCTGGGTATACTTGTATTGGAATTGTTGGCATTAAGGATCCTGTTCGTCCCGGTGTTAAAGAATCAGTTGCAGTGTGTCGTTCAGCTGGTATAACAGTAAGGATGGTTACCGGTGACAACATTGATACTGCAAAGGCTATAGCTAGAGAATGTGGGATTTTAACAGATGACGGTATAGCCATTGAAGGTACAGAATTTAGAGAGAAGAGTCAAGAGGAATTGTTCAAACTGATCCCAAAAATTCAGGTTATGGCTCGTTCTTCACCCATGGACAAGCATACATTGGTGAAACACCTCCGTACCACATTTGGCGAAGTTGTAGCTGTTACTGGTGATGGAACAAATGATGCACCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATTATTCTGGATGATAATTTTTCCACAATCGTGACAGTGGCAAAATGGGGCCGTTCAGTTTACATAAACATCCAGAAATTTGTACAATTCCAGCTAACCGTTAATGTGGTTGCATTACTAGTGAACTTCACCTCAGCGTGCTGGACAGGAAGTACGCCCCTTACAGCTGTTCAATTACTGTGGGTGAACATGATAATGGACACACTGGGAGCCCTGGCACTTGCAACTGAACCTCCTAACGATGAATTGATGAAGCGATCACCAGTAGGAAGGACGGGTAATTTCATTAGCAACACCATGTGGAGGAACATCTTAGGCCAATCATTGTATCAGATTATGGTGATATGGTTTCTTCAGACCAGTGGAAAATTGTATTTTAACCTCAGTGGCCCTGATGCTGATCTGATCCAAAACACACTAATTTTCAACGCATTTGTCTTCTGTCAGGTTTTTAATGAAATAAGCTCACGTGAAATGGAGAAGATAAATGTTTTCAAAGGCATATTGAATAATTATGTTTTCGTAGGGGTCATCAGTTGCACTGTTATCTTTCAAATCATAATCGTTGAGTTCCTGGGAACCTTTGCAAACACCACACCTCTCACACTGCACCAGTGGATCTCAAGCATATTTATCGGGCTTATGGGCCTGCCAATTGCAGCTGTCATAAAGTTGCTCTCTGTCTGA | 3054 | 0.4335 | MDEFLIDERFTRVRSKNSSREALEKWRNLCSVVKNPKRRFRFTANLSKRDEAEAMRRTNQEKLRVAILVSKAAIHFTQGVSPSDYVVPEDVKAEGFQICAEELGSIVEGHDTKKLQYHGGVNGLAGKLSASITDGLSNDTNLLNKRQKIYGINKFTESEARSFWVFVWEALQDMTLMILGVCALVSLIVGIAMEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKITIQVTRNGYRQKMSIYDLLPGDIVHLAIGDQVPADGLFLSGFSVMIDESSLTGESEPVMVSSENPFLLSGTKVRDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLLTRKFQEGSLLTWSGDEALQTLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNKKEVSNDASSTLPSDIPDSAVKLLLQSIFLNTGGEVVVNDNGKREVLGTPTDTAILEFGLSLGGNFQAVRNACKLVKVEPFNSLKKRMGVVVELPEGGGLRAHTKGASEIILAACDKVINSKGEVVPLDEESRNRLTVTINQFASEALRTLCIAYMDMEKGFSPEDPIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNIDTAKAIARECGILTDDGIAIEGTEFREKSQEELFKLIPKIQVMARSSPMDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFTSACWTGSTPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRTGNFISNTMWRNILGQSLYQIMVIWFLQTSGKLYFNLSGPDADLIQNTLIFNAFVFCQVFNEISSREMEKINVFKGILNNYVFVGVISCTVIFQIIIVEFLGTFANTTPLTLHQWISSIFIGLMGLPIAAVIKLLSV | 1017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco11g2022 | 1017 | PANTHER | CATION TRANSPORTING ATPASE | 60 | 1016 | - | - | |
| Acco11g2022 | 1017 | FunFam | Calcium-transporting ATPase | 649 | 801 | - | - | |
| Acco11g2022 | 1017 | NCBIfam | HAD-IC family P-type ATPase | 726 | 843 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco11g2022 | 1017 | NCBIfam | HAD-IC family P-type ATPase | 545 | 701 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco11g2022 | 1017 | NCBIfam | HAD-IC family P-type ATPase | 206 | 485 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco11g2022 | 1017 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 117 | 1015 | IPR023298 | - | |
| Acco11g2022 | 1017 | Gene3D | - | 18 | 78 | - | - | |
| Acco11g2022 | 1017 | Pfam | Cation transporting ATPase, C-terminus | 841 | 1015 | IPR006068 | - | |
| Acco11g2022 | 1017 | CDD | P-type_ATPase_Ca_PMCA-like | 143 | 889 | - | - | |
| Acco11g2022 | 1017 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 7 | 51 | IPR024750 | GO:0005516 | |
| Acco11g2022 | 1017 | SUPERFAMILY | HAD-like | 452 | 861 | IPR036412 | - | |
| Acco11g2022 | 1017 | PRINTS | H+-transporting ATPase (proton pump) signature | 788 | 813 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco11g2022 | 1017 | PRINTS | H+-transporting ATPase (proton pump) signature | 756 | 772 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco11g2022 | 1017 | PRINTS | H+-transporting ATPase (proton pump) signature | 612 | 630 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Acco11g2022 | 1017 | SFLD | C1.7: P-type atpase like | 436 | 808 | - | - | |
| Acco11g2022 | 1017 | SUPERFAMILY | Calcium ATPase, transduction domain A | 239 | 334 | IPR008250 | - | |
| Acco11g2022 | 1017 | Gene3D | - | 451 | 801 | IPR023214 | - | |
| Acco11g2022 | 1017 | FunFam | Calcium-transporting ATPase | 464 | 660 | - | - | |
| Acco11g2022 | 1017 | SFLD | p-type atpase | 436 | 808 | IPR044492 | - | |
| Acco11g2022 | 1017 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 456 | 462 | IPR018303 | - | |
| Acco11g2022 | 1017 | Pfam | Cation transporter/ATPase, N-terminus | 117 | 186 | IPR004014 | - | |
| Acco11g2022 | 1017 | Gene3D | - | 142 | 337 | - | - | |
| Acco11g2022 | 1017 | Pfam | Cation transport ATPase (P-type) | 515 | 594 | - | - | |
| Acco11g2022 | 1017 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 110 | 1015 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Acco11g2022 | 1017 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 460 | 665 | IPR023299 | GO:0000166 | |
| Acco11g2022 | 1017 | Gene3D | - | 464 | 660 | IPR023299 | GO:0000166 | |
| Acco11g2022 | 1017 | Gene3D | - | 169 | 1014 | - | - | |
| Acco11g2022 | 1017 | FunFam | Calcium-transporting ATPase | 18 | 78 | - | - | |
| Acco11g2022 | 1017 | Pfam | haloacid dehalogenase-like hydrolase | 652 | 770 | - | - | |
| Acco11g2022 | 1017 | PRINTS | P-type cation-transporting ATPase superfamily signature | 653 | 664 | - | - | |
| Acco11g2022 | 1017 | PRINTS | P-type cation-transporting ATPase superfamily signature | 756 | 775 | - | - | |
| Acco11g2022 | 1017 | PRINTS | P-type cation-transporting ATPase superfamily signature | 285 | 299 | - | - | |
| Acco11g2022 | 1017 | PRINTS | P-type cation-transporting ATPase superfamily signature | 675 | 685 | - | - | |
| Acco11g2022 | 1017 | PRINTS | P-type cation-transporting ATPase superfamily signature | 780 | 792 | - | - | |
| Acco11g2022 | 1017 | PRINTS | P-type cation-transporting ATPase superfamily signature | 454 | 468 | - | - | |
| Acco11g2022 | 1017 | FunFam | Calcium-transporting ATPase | 773 | 1017 | - | - | |
| Acco11g2022 | 1017 | FunFam | Calcium-transporting ATPase | 217 | 337 | - | - | |
| Acco11g2022 | 1017 | Pfam | E1-E2 ATPase | 237 | 432 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco11g2022 | Acco-ChrAcco11 | 34422728 | 34427640 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco11g2022 | 3 | 1017 | Primary Pumps ATPases | AT4G37640 | 82.167 | 0.0 | 1701 |