Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2020 ATGACTCTCATGATCCTTGTACTATGTGCTCTTGTGTCTCTCATAGTTGGCATAGCAATGGAAGAATGTCCCCATGGGGCCCATGATGGTCTTGGAATTGTTGCAAGTATCTTGCTGGTTGTCTTTGTGACAGCAACAAGTGATTACCGCCAATCATTACAATTCATGGACTTGGAGAAAGAGAAGAAGAAGATCACTATTCAGGTCACAAGAAATGGTTATAGGCAGAAAATGTCAATATATGATTTACTTCCCGGCGACATTGTGCATCTTGCTATAGGAGACCAAGTCCCAGCTGATGGCCTGTTTCTTTCGGGATTCTCTGTGATGATCGATGAGTCGAGTTTAGCCGGAGAGAGTAAGCCAGTGATGGTGAGTTCTGAAAATCCATTTCTTCTTTCAGGTACTAAGGTCAGAGATGGCTCTTGCAAAATGATGGTTACCACAGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCAACTCTCAGTGAAGGAGGAGATGATGAAACCCCACTGCAAGTGAAGTTAAATGGAGTGGCAACCATCAGCGGGAAGATAGGCCTGTTCTTTGATGTAGTTACTCAATCATTTTTAGTGCAAGGCCTTTTGACCCGTAAGTTCCAAGAAGGAAGCCTCTTGACCTGGTCTGGAGATGAGGCGATGCAAACTTTGGAATTCTTTGCTGTTGCAGTTACAATCTTTCTTGTTGCTGTTCCGGAGGGGCTGCCATTAGCTGTCACATTGAACCTTGCTTTTGCTATGAAGAAGATGATGAATGACAAAGCCCTTGTCCGAAACTTAGCAGCTTGTGAAACCATGGGATCAGCCACAACAATATGCAGTGACAAGACTGGAACATTAACTACCAACCGCATGACAGTTGTGAAAACATGCATTTGCATGAATAAGAAGGAAGTGAGCAATGATGCTTCTTCTACCTTACCTTCTGATATCCCTGATTCTGCTGTGAAACTGCTGCTACAGTCAATATTTCTTAACACTGGAGGAGAAGTTGTGGTCAATGACAATGGAAAACGTGAGGTTTTGGGGACTCCCACAGATACTGCAATATTGGAGTTTGGGTTATCTCTGGGTGGGAACTTTCAGGCAGTGAGAAATGCGTGA 1128 0.4397 MTLMILVLCALVSLIVGIAMEECPHGAHDGLGIVASILLVVFVTATSDYRQSLQFMDLEKEKKKITIQVTRNGYRQKMSIYDLLPGDIVHLAIGDQVPADGLFLSGFSVMIDESSLAGESKPVMVSSENPFLLSGTKVRDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATISGKIGLFFDVVTQSFLVQGLLTRKFQEGSLLTWSGDEAMQTLEFFAVAVTIFLVAVPEGLPLAVTLNLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNKKEVSNDASSTLPSDIPDSAVKLLLQSIFLNTGGEVVVNDNGKREVLGTPTDTAILEFGLSLGGNFQAVRNA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2020 375 Gene3D - 291 366 IPR023299 GO:0000166
Acco11g2020 375 Gene3D - 278 290 IPR023214 -
Acco11g2020 375 PANTHER CATION TRANSPORTING ATPASE 1 374 - -
Acco11g2020 375 PRINTS P-type cation-transporting ATPase superfamily signature 112 126 - -
Acco11g2020 375 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Acco11g2020 375 NCBIfam HAD-IC family P-type ATPase 33 312 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco11g2020 375 FunFam Calcium-transporting ATPase 44 164 - -
Acco11g2020 375 Pfam E1-E2 ATPase 64 259 - -
Acco11g2020 375 Gene3D - 4 277 - -
Acco11g2020 375 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 275 IPR023298 -
Acco11g2020 375 PRINTS Sodium/potassium-transporting ATPase signature 274 295 - -
Acco11g2020 375 PRINTS Sodium/potassium-transporting ATPase signature 31 51 - -
Acco11g2020 375 Gene3D - 52 164 - -
Acco11g2020 375 SUPERFAMILY Calcium ATPase, transduction domain A 66 161 IPR008250 -
Acco11g2020 375 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 287 374 IPR023299 GO:0000166
Acco11g2020 375 ProSitePatterns E1-E2 ATPases phosphorylation site. 283 289 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2020 Acco-ChrAcco11 34412943 34414070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2020 1 375 Primary Pumps ATPases AT4G37640 80.533 0.0 596