Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2017 ATGAAAAGAAGACATCCAATATATGGATGCTACAGAAAAGAGGAACAATTGATTAGCTCTTTCACAGATAAAGGGAAGTTTCTCTTAGCAGCTAGGAGATATAGGCGTGGTGCTAATACTGAATATATCATATCACTTGATGATGAGGACTTTTCCCAAGGAAGTAATGCTTATGTTGGAAAGTTAAGCTTGGTTCGGTCTTTCTTTCATCAACCTCGGGGCATCTTAGCACTAGCAGATCCCTGTTTCCCGACCTCTCCCTCTCTTTCGTGGCTGCGCGAGCTTGCAAGTCCTGCGAAGATGAGCAAAGGACCAGGCCTTTTCTCCGACATCGGCAAGAAAGCTAAAGATCTTCTAACCAAGGACTACAGCTCCGATCAGAAGGTCACCGTTTCTACCTACAGTGGTGCTGGAGTGGCCCTTACTTCGACGGCGGTGAAGAAAGGAGGACTCTCCACTGGGGATGTAGCCGCACAGTATAAGCAAAAGAACAGTATCATTGATGTCAAAGTTGACACCGAATCAAATATCTCTACAACGCTTACATTCACTGACATTGTGCCATCCACAAAAACCATCGCTTCATTTAAGCTGCCTGATTATAATTCTGGCAAGGTGGAGGTTCAATACTACCATGACCATGCTACTGTAACAACAGTCATCGCTTTGAAACAATCACCTATTATTGATTTTTCTGCCACCATCGGTACTCCAACCATTGCGTTTGGTGCCGAGGCAGGCTATGATACCACATCTGGTGGTTTCAACAAATATACAGCTGGGATTGGTGTGACCAGACCCGATTCACATGCTTCAATAATTGTTGGCGACAAGGGAGACAGCATTAGAGCATCATATGTACATCATCTAGACCAGTCTAAGAAAAGTTCTGCTGTAGGAGAAATCAGTAGAAAGTTTTCCACAAATGAGAACACTTTTACGGTTGGAGGCTCATTTGCTGTGGACCATCTGACACAGATCAAAGCAAGGCTCAACAATCATGGGAAGCTTGGGGCTATCCTCCAGCATGAGATCATTCCAAAGTCAGTGCTAACCATTTCTGGAGAAGTTGACACAAAAGCCTTAGAAAGAAACCCCAAGCTTGGGTTGGCAATAGCCCTCAAACCTTGA 1131 0.4447 MKRRHPIYGCYRKEEQLISSFTDKGKFLLAARRYRRGANTEYIISLDDEDFSQGSNAYVGKLSLVRSFFHQPRGILALADPCFPTSPSLSWLRELASPAKMSKGPGLFSDIGKKAKDLLTKDYSSDQKVTVSTYSGAGVALTSTAVKKGGLSTGDVAAQYKQKNSIIDVKVDTESNISTTLTFTDIVPSTKTIASFKLPDYNSGKVEVQYYHDHATVTTVIALKQSPIIDFSATIGTPTIAFGAEAGYDTTSGGFNKYTAGIGVTRPDSHASIIVGDKGDSIRASYVHHLDQSKKSSAVGEISRKFSTNENTFTVGGSFAVDHLTQIKARLNNHGKLGAILQHEIIPKSVLTISGEVDTKALERNPKLGLAIALKP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2017 376 Gene3D Tubby Protein; Chain A 1 70 IPR025659 -
Acco11g2017 376 FunFam Outer mitochondrial membrane protein porin 101 375 - -
Acco11g2017 376 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 101 376 IPR001925 GO:0005741|GO:0008308|GO:0098656
Acco11g2017 376 Pfam Eukaryotic porin 104 369 IPR027246 GO:0005741|GO:0055085
Acco11g2017 376 SUPERFAMILY Tubby C-terminal domain-like 14 63 IPR025659 -
Acco11g2017 376 CDD Porin3_VDAC 105 375 IPR001925 GO:0005741|GO:0008308|GO:0098656
Acco11g2017 376 Gene3D Porin 95 375 IPR023614 -
Acco11g2017 376 Pfam Tub family 5 63 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2017 Acco-ChrAcco11 34382482 34388898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2017 17 62 TUB Transcription Factor Family AT1G53320 84.783 1.51e-17 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco11g2017 Porin_3 1.6e-62 CL0193