Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2015 ATGTCTGTGACCTTCAGAGCGAAGCAGTTCGATATTTCTTCAGGCCAGAAGGAAGCCGCGGGTAGGGACCCTTCGTTGAGAGCCAAAATGAAGTATAACCCACGGGTCTCCAGCTCTCGTCGCAAGAACAGGAAGGCGCACTTCACGGCGCCGTCCAGTGTTCGCCGTGTTCTGATGAGCGCGCCTCTTTCGACCGACCTTCGATCCAAATACAACGTGCGGTCCATGCCAATTCGCAAGGACGACGAGGTTCAAGTTGTTCGCGGCACCTACAAAGGTCGTGAGGGAAAGGTGGTTACGGTCTACCGCCGCAAATGGGTCATTCACATCGAGCGGATTACTCGTGAGAAGGTAAATGGTTCAACCGTGAATGTTGGGATTAACCCTTCGAAGGTTGTGATCTCAAAGCTGAAGTTGGATAAGGACCGCAAGTCCTTGCTTGATCGCAAGGCCAAGGGACGTGCGGCCGCCGACAAGGTCAAGGGCACCAAGTTTACTGCTGAGGACATAATGCAAAATGTTGATTAG 528 0.5284 MSVTFRAKQFDISSGQKEAAGRDPSLRAKMKYNPRVSSSRRKNRKAHFTAPSSVRRVLMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRGTYKGREGKVVTVYRRKWVIHIERITREKVNGSTVNVGINPSKVVISKLKLDKDRKSLLDRKAKGRAAADKVKGTKFTAEDIMQNVD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2015 175 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 30 171 IPR005756 GO:0003735|GO:0006412|GO:0015934
Acco11g2015 175 ProSitePatterns Ribosomal protein L24 signature. 81 98 IPR005825 GO:0003735|GO:0005840|GO:0006412
Acco11g2015 175 Gene3D - 30 173 IPR014722 -
Acco11g2015 175 FunFam 60S ribosomal protein L26 30 173 - -
Acco11g2015 175 NCBIfam 50S ribosomal protein L24 37 151 IPR005756 GO:0003735|GO:0006412|GO:0015934
Acco11g2015 175 SMART kow_9 77 104 IPR005824 -
Acco11g2015 175 CDD KOW_RPL26 81 134 IPR041988 GO:0003723
Acco11g2015 175 Hamap 50S ribosomal protein L24 [rplX]. 14 150 IPR005756 GO:0003735|GO:0006412|GO:0015934
Acco11g2015 175 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 37 150 IPR005756 GO:0003735|GO:0006412|GO:0015934
Acco11g2015 175 Pfam KOW motif 80 111 IPR005824 -
Acco11g2015 175 SUPERFAMILY Translation proteins SH3-like domain 37 154 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2015 Acco-ChrAcco11 34379451 34380561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2015 30 175 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 89.041 1.40e-94 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2015 11 34379451 34380561 Acco11g2015 11 34379451 34380561 ECH