Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2011 ATGGGTGCTCCAAAGCAAAAGTGGACTGCTGAAGAAGAAGCGGCACTGAAAGCTGGAGTAATCAAACATGGGGCAGGAAAGTGGCGCACTATACTTACAGACCCAGAGTTCAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTAAAGGATAAATGGAGGAATATAAATGTGACTGCAATATGGGGATCCAGACAGAAGGCAAAACTTGCACTTAAAAAGAACCTACCGACCCCAAAAAATGATAACAACCATTTGGCATTGAGTACTGTTGTTCAACATGGTGAAGAAGTTCTTGATACTAAGCCTCTAGCAGTTGCTGGCAGACTGTCACAGCCTGCTAACCCAAAAGAACAAATATCTAGGTTGGATAGTTTTATATTAGAGGCTATTATCAATTTGAAGGAGCCAAAGGGTACTGACAGGGCTGCTATTGCTGCTTACATAGAGGAGCATTATTGTTCTCCTCCGAACCTCAGAAAGTTATTGTCAACGAAACTGAAGCATATGGTGGCTAGTGGTAAATTGATCAAGGTTAAACACAAGTATAGGATCACTCCAAGTTCTGCAATCTCTGAGAAAAGAAGACACTCTAACTTGTTACTCTTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCGGAGAAGACCAATGTCAACGTACTTTCAAAATCGCAGATTGACGCAGAGCTATCAAAAATGAAAGGCGTGACAGCCCAAGAAGCTGCTGCAGCTGCGGCAAAGGCAGTTGCTGAAGCAGAAGCGGCAATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCTGAAGCAGAGGCCGCACAAGTGTTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAGAACACTGCAAATTTGAGGGTGTGAACTTCAGGCTGCATCGTCACCAGCTATCCTCCATTAG 930 0.4462 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPTPKNDNNHLALSTVVQHGEEVLDTKPLAVAGRLSQPANPKEQISRLDSFILEAIINLKEPKGTDRAAIAAYIEEHYCSPPNLRKLLSTKLKHMVASGKLIKVKHKYRITPSSAISEKRRHSNLLLLEGRPKDSPKAEKTNVNVLSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMKALKCRTLQIXGCELQAASSPAILH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2011 309 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco11g2011 309 CDD H15 127 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco11g2011 309 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Acco11g2011 309 Coils Coil 242 279 - -
Acco11g2011 309 FunFam Telomere repeat-binding factor 1 2 58 - -
Acco11g2011 309 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco11g2011 309 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Acco11g2011 309 CDD SANT_TRF 6 57 - -
Acco11g2011 309 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Acco11g2011 309 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Acco11g2011 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Acco11g2011 309 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco11g2011 309 Gene3D - 2 59 - -
Acco11g2011 309 SUPERFAMILY "Winged helix" DNA-binding domain 118 196 IPR036390 -
Acco11g2011 309 SMART sant 4 59 IPR001005 -
Acco11g2011 309 Gene3D - 117 197 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2011 Acco-ChrAcco11 34348490 34351833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2011 1 290 Single Myb Histone (SMH) Gene Family AT5G67580 57.338 6.35e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco11g2011 Linker_histone 1.4e-11 CL0123