Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1978 ATGAGGACCCTGCTTGTGCTTTCTTTGTTTTTGGGGTTTCAGGAATCAGGGGTTATTTGCGGTTCTTGTGTCTTGTTTGGAGTTACTATATTAATTCTGTCCAAAGAGACAAACATATATACGGACTCCTCACAGAGCCAGCCAGCCCCAGAGAGAGACAGAGCATTTGGATTGATTCAGTTGCTCTCAGGAGTTAGATTTCGTTACTTGGATGGTGAACAAGTGAAACAGACAACGATGAAGACCGTGGAGAATGATGAAAACAACTGGCTGGGTTTCTCTCTCTCCCCCCACATGAATCTAGATGTTCCTTCTGACTGTAATGACCAACAACACCAACAACAGGACACACAAGTGACACGGCCTTCCTCTGCCGCCGCAGATACAGTTCCGGCAAGCTTCTATCACTCCATGCCCCTTCCTCCTAATTATGGCATTTACTATGGTGGTGGCCTTGAAGCTGAAAATGTCGGCTTCTATTCTTCCCTTCCTGTCATGCCCCTAAAATCTGACGGCTCTCTCTATCTAATGCACCCACAACCTCAAGCAATGGTATCGGCTTCAGCCCCAAAACTGGAGAATTTCTTAGGCAGCTCTACATTGGGGACCTTGAGCTTAGACAGCATGATTTTCGCCAACCAATCCTCACGCCGAGAACTCCTCAACACAAACTATCTAAACCACCGCGTAGAACAGGGGCAAGACATTCAGGCTCAGCCTTTCGCATCATACTATTCTGGCTTCAGAAGTCATGAAATGATGTTAGAAGGGGCCAAGCAAAATGATGTTTCAGAGTGTAATGTCCAAGTCCCAAGTATTGCAGAGGAGGGAGTTTCTGGAATGAAGAGCTGGGGCATGAGAATCAACCAAACTGGCCATGCACTGGAGCCGGAGATGATGGTGAGCGTTGAGGATAACAATGGCGGCGAATCTGGGTCCATTGGATCAATGGCGTATGGCGATTTGCAGTCACTGAGCTTGTCCATGGGCTCACAGTCAAGCTGTGTCACAAGTTCGCAGAGAGCTTCGCCTTCCGTCATTGACTCTGTTGGCGTGGATACAAAGAAAAGAGGACCTGAAAAGTTTGACCAGAAGCAAATTATTCACCGGAAATCCATAGATACCTTTGGCCAAAGAACCTCCCAATATAGAGGTGTAACAAGACATAGATGGACTGGTAGATACGAAGCACATCTTTGGGATAACAGTTGCAAGAAAGAGGGTCAAAGCAGGAAAGGAAGGCAAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCTGCACTCAAGTATTGGGGGCCCTCCACTCATATCAATTTCCCATTGGAAAATTATGAAAATGAACTCGAGGAAATGAAGAACATGACCAGACAGGAATACGTTGCTCATTTGCGGAGGAAAAGCAGCGGATTCTCCAGAGGTGCTTCCATGTACAGAGGAGTAACAAGACATCATCAACATGGGCGGTGGCAAGCTCGAATCGGTAGAGTGGCTGGAAACAAGGATCTATATCTTGGAACATTCAGCACCCAAGAGGAAGCAGCTGAGGCATATGACATAGCAGCTATTAAGTTCCGTGGAGTAAACGCGGTGACCAACTTTGACATAACAAGATATGATGTGGACAAAATCATGGCCAGCAGTAACCTTCTTAGCGGTGAACTAGCCAGGCGAAACAGAGAGATCGATGCTGTTAACGATCGGGCCATCATTCCTATAGGTTCTGCATATGTTGAAAACCAACAGGATGCGATTTCAATGCACAAGAGCTTCGATGGCCAGTCATCAGAGTGGAAGTTGGGAACGCATATCTTAGATCGTTCTCAATGGATGAAAGAAGTTGGCCAAAATCCAGCAGCAAGAATTGAGACTTATAGAACTCAGTCCTACTCAATGCCTTATTTAGATAACTTGCTCCATCAAGTGGATGACTCAACCAAGATGGGAACACACGTCTCAAATCCTTCGTCATTAGTAACAAGTTTGAGCAGCTCCCGAGAAGTTAGTCCTGATAAAACAAGCCTGCCAATTCTCACTGAGACGCCTTCGTTAGTGACAAGCTTGAGGCCTCCACTTTCATTGCCTCATGTGCCAGTTTTTGCTGCTTGGACAGATGCTTGA 2133 0.4623 MRTLLVLSLFLGFQESGVICGSCVLFGVTILILSKETNIYTDSSQSQPAPERDRAFGLIQLLSGVRFRYLDGEQVKQTTMKTVENDENNWLGFSLSPHMNLDVPSDCNDQQHQQQDTQVTRPSSAAADTVPASFYHSMPLPPNYGIYYGGGLEAENVGFYSSLPVMPLKSDGSLYLMHPQPQAMVSASAPKLENFLGSSTLGTLSLDSMIFANQSSRRELLNTNYLNHRVEQGQDIQAQPFASYYSGFRSHEMMLEGAKQNDVSECNVQVPSIAEEGVSGMKSWGMRINQTGHALEPEMMVSVEDNNGGESGSIGSMAYGDLQSLSLSMGSQSSCVTSSQRASPSVIDSVGVDTKKRGPEKFDQKQIIHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYENELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVDKIMASSNLLSGELARRNREIDAVNDRAIIPIGSAYVENQQDAISMHKSFDGQSSEWKLGTHILDRSQWMKEVGQNPAARIETYRTQSYSMPYLDNLLHQVDDSTKMGTHVSNPSSLVTSLSSSREVSPDKTSLPILTETPSLVTSLRPPLSLPHVPVFAAWTDA 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1978 710 ProSiteProfiles AP2/ERF domain profile. 382 445 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 ProSiteProfiles AP2/ERF domain profile. 481 539 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 186 564 - -
Acco11g1978 710 Coils Coil 446 466 - -
Acco11g1978 710 PRINTS Ethylene responsive element binding protein signature 521 541 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 PRINTS Ethylene responsive element binding protein signature 383 394 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 FunFam AP2-like ethylene-responsive transcription factor 480 541 - -
Acco11g1978 710 MobiDBLite consensus disorder prediction 650 678 - -
Acco11g1978 710 CDD AP2 480 541 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 CDD AP2 381 445 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 SMART rav1_2 481 545 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 SMART rav1_2 382 451 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 SUPERFAMILY DNA-binding domain 480 540 IPR016177 GO:0003677
Acco11g1978 710 SUPERFAMILY DNA-binding domain 381 447 IPR016177 GO:0003677
Acco11g1978 710 Gene3D AP2/ERF domain 381 447 IPR036955 GO:0003700|GO:0006355
Acco11g1978 710 Gene3D AP2/ERF domain 481 541 IPR036955 GO:0003700|GO:0006355
Acco11g1978 710 FunFam AP2-like ethylene-responsive transcription factor ANT 381 447 - -
Acco11g1978 710 Pfam AP2 domain 382 437 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 Pfam AP2 domain 482 531 IPR001471 GO:0003700|GO:0006355
Acco11g1978 710 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1978 Acco-ChrAcco11 34087771 34092373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1978 143 710 AP2-EREBP Transcription Factor Family AT4G37750 45.785 1.02e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Acco11g1978 AP2 4.8e-10 CL0081