Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1972 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCAACGTGAAGAGAGGCCCTTGGTCCCCTGAGGAAGACGCCAAGCTCAAGGCCTGTATTGAGCAGCTCGGCACTGGCGGCAACTGGATTGCCTTGCCCCAAAAGATAGGCCTTAAGAGATGTGGGAAAAGCTGTCGCCTAAGATGGTTGAATTATCTTCGGCCAAACATAAAGCATGGGGGTTTCTCGGAGGAAGAAGACAACATAATCTGCAGCCTCTATGCCACTATTGGAAGCAGGTGGTCAATAATTGCATCCCAATTACCGGGGAGAACTGATAATGATATAAAGAACTACTGGAACACCAGGTTGAGGAAGAAGCTTCTGGGTAAGCAGCGCAGGGAACAACAGGCCCATGCTCGCCCAAAGCCACTCATGATGAAGAACCAGACTGAACATTTGGTGACACCTGTGACCCAAAATCCCACCTGGCCTGCCCAACAATATCATGATCCCAACCATGGAAACTTGCCAAATAAAGTAGAATACCACCAACCATACTCACACACACTTTCATCCCAAACCATAAATTCCGACTACCAACTTCTCCAACAAGAACAGCAGCCATACTCGGCCTCAATTGATTCAGCAACAGCACCGCTAGCGAATAATAGTAGTAGTAGCAGTTGTGATCAGTCGTCATCCAACATTTTCCACGGCTTTGAAAGCTTTGTCGATGATTATTGGAGTGAGTTGGTGAGTATGAGGCCACTGCAACAACTAGATGCTGCGCTGCAGGGTTACTGTGGAATGGGTAGCAGCGGTGCAGCTTCAACAGAAAGCACTAGCTGGGGTGATATTACCTCTCACCTTCAGCTTTACTCTCCTCTGGTTTCGCCATACCAAGTAGTCCAACAAGGAATGCCTCATGATATGGCTTGTTTTGAGGAGTCTACCAACTTTGGAGTGCAATAG 942 0.482 MGRAPCCDKANVKRGPWSPEEDAKLKACIEQLGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYATIGSRWSIIASQLPGRTDNDIKNYWNTRLRKKLLGKQRREQQAHARPKPLMMKNQTEHLVTPVTQNPTWPAQQYHDPNHGNLPNKVEYHQPYSHTLSSQTINSDYQLLQQEQQPYSASIDSATAPLANNSSSSSCDQSSSNIFHGFESFVDDYWSELVSMRPLQQLDAALQGYCGMGSSGAASTESTSWGDITSHLQLYSPLVSPYQVVQQGMPHDMACFEESTNFGVQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1972 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Acco11g1972 313 CDD SANT 71 113 IPR001005 -
Acco11g1972 313 MobiDBLite consensus disorder prediction 150 171 - -
Acco11g1972 313 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Acco11g1972 313 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Acco11g1972 313 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Acco11g1972 313 FunFam Transcription factor RAX3 7 68 - -
Acco11g1972 313 PANTHER OS09G0431300 PROTEIN 1 225 - -
Acco11g1972 313 FunFam Transcription factor MYB36 70 140 - -
Acco11g1972 313 SMART sant 13 64 IPR001005 -
Acco11g1972 313 SMART sant 67 115 IPR001005 -
Acco11g1972 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Acco11g1972 313 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Acco11g1972 313 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Acco11g1972 313 Gene3D - 70 141 - -
Acco11g1972 313 CDD SANT 16 62 IPR001005 -
Acco11g1972 313 MobiDBLite consensus disorder prediction 119 138 - -
Acco11g1972 313 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1972 Acco-ChrAcco11 33985691 33986881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1972 1 137 MYB Transcription Factor Family AT5G65790 84.783 6.06e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco11g1972 Myb_DNA-binding 1.8e-13 CL0123