Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1970 ATGGGTTTTGGTGATGCTTCTAGTAGCCCTGGCCCTCACCTTGTTCTGGGGTTAGCTCCCACTGGTTCTCCATCCAAGGCTGAACATAACAGCACGCCAGTCAAGAGCTCTTGCAGTTTCACGCCAACAAGTAGTTGTGAGCCATCTTTGACTCTGGCTCTCTCCGCTGAGACTAATTACCGACAAGTCCCCAGAAAGTTTGAGGGGAAAAAAGGTTGTGAGGATCCTCTTGACTTTTCTCGCCAGGCATCACCTCGCAGCGCCGTCTCATCCTTCTCCGGTGGCAGAGTGAAAAGGGAGAGAGATCTCTCCGGCGAAGAGGTTGAGGTGGCCGAGAGGGTTTCCTCAAGAGGGAGTGACGAAGACGAAGACGGAACCAATGCTAGAAAGAAGCTCAGACTCAACAAAGAACAATCCGCCTTGCTGGAGGAAAGCTTCAAACAAAACAGCACTCTCAATCCAAAGCAGAAGCAAGCATTAGCCAGGGAGCTAAATCTGAGGCCGAGACAAGTTGAAGTGTGGTTCCAAAATCGGAGAGCCAGGACAAAGCTGAAGCAGACGGAGGTAGACTTCGAGTTGTTAAAGAAATGCTGCGAGACGCTGACAGACGAAAACAGGAGGCTGCAGAAGGAGTTGCAAGAGCTGAAGGCGCTCAAGGTAACCCAACCTTTGTACATGGCGATGCCGGCGGCCACCCTCACCATGTGCCCGTCCTGCGAGAGGCTGGGCGGGGTCGCCGGCGACGGCGCTTCTAATGACAAGACCGCCTTCTCCATGGCTCCCAAACCTCACCATTTCTACACTCCCTTCCCCAATCCGTCGGCGGCATGCTGA 834 0.5372 MGFGDASSSPGPHLVLGLAPTGSPSKAEHNSTPVKSSCSFTPTSSCEPSLTLALSAETNYRQVPRKFEGKKGCEDPLDFSRQASPRSAVSSFSGGRVKRERDLSGEEVEVAERVSSRGSDEDEDGTNARKKLRLNKEQSALLEESFKQNSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDFELLKKCCETLTDENRRLQKELQELKALKVTQPLYMAMPAATLTMCPSCERLGGVAGDGASNDKTAFSMAPKPHHFYTPFPNPSAAC 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1970 277 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Acco11g1970 277 MobiDBLite consensus disorder prediction 24 47 - -
Acco11g1970 277 MobiDBLite consensus disorder prediction 1 47 - -
Acco11g1970 277 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Acco11g1970 277 Pfam Homeobox associated leucine zipper 185 218 IPR003106 GO:0006355|GO:0043565
Acco11g1970 277 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Acco11g1970 277 Coils Coil 191 221 - -
Acco11g1970 277 MobiDBLite consensus disorder prediction 64 131 - -
Acco11g1970 277 CDD homeodomain 129 186 IPR001356 GO:0003677
Acco11g1970 277 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Acco11g1970 277 FunFam Homeobox-leucine zipper protein 18 113 190 - -
Acco11g1970 277 SUPERFAMILY Homeodomain-like 118 186 IPR009057 -
Acco11g1970 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 256 - -
Acco11g1970 277 Gene3D - 122 190 - -
Acco11g1970 277 MobiDBLite consensus disorder prediction 95 131 - -
Acco11g1970 277 SMART HOX_1 127 189 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1970 Acco-ChrAcco11 33958736 33959908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1970 1 277 Homeobox Transcription Factor Family AT4G37790 59.386 2.35e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco11g1970 Homeodomain 6.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1970 11 33958736 33959908 Acco12g1802 12 29241002 29242107 CCT