Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1960 ATGCGACTGCTCCTCTTGCTCTTTCTTCTTCTCCATTGCAACCACTCCCTTTCTTTGCTCGTCTCTGAGCACCGTGCTCTCCTCTCCTTCAAGGCTTCCATTTCCGATGACCCCCAATCTGCTCTTTCTTCCTGGAATTCCTCTTCTGAGTACTGCACATGGTCCGGCGTCACCTGTGACTCCCGCCGACATGTTTCTTCTCTTGACCTTACCGGTCTCAATCTGTCTGGCATACTCCCCAACGACCTTGCTCATATGCCATTCCTCTCTAACCTCTCCCTCGCCGGTAACCAGTTCTCTGGACCCCTTCCCCCGGGGATCTCTGCCATTGCTAGCCTTCGATTCCTAAACCTTTCAAACAATGGCTTTAATGGCACTTTCCCTCCCGAATATTCTCAGCTCAAGAATATTCAGGTCCTCGACCTTTATAACAATAACATGAGTGGATCCCTTCCGCGCGTGGTGATGGAGATGCCAAATCTCCGGCATTTGCATCTCGGCGGGAACTTCTTTTCGGGTCAGATCCCGCCGGAGTACGGACGTTGGGAACATTTGGAATACTTGGCTGTTTCTGGCAACGAGCTGAATGGCACCATACCGCCGGAGATCGGAAACTTGACCAGCCTCCGGGAACTCTATATCGGATACTTCAACAATTACACGCGTGGCCTACCACCTGAGATTGGAAACTTATCCAAACTCGTCAGATTTGACGCGGCTAACTGTGGATTGACTGGCGAGATACCAGCGGAGCTTGGGAGGCTTCAGAATCTCGATACTCTGTTTCTTCAAGTGAATGGACTTTCAGGTTCTCTGACGCCAGAGCTTGGGAGCCTGAAGAGCTTAAAATCCATGGACTTATCCAATAACATGCTGACGGGTGAGATTCCGGATAGCTTTAGTGAGCTCAAGAACCTAACGCTTTTGAACCTGTTCAGAAATAAGCTTCATGGAGCCATTCCTGAGTTTATTGGGGATTTGCCGTCGCTGGAGGTGCTCCAGCTTTGGGAGAATAACTTCACTGGAAGCATTCCTCAGGGCCTGGGAAAGAACGGGAGGCTGGTATTTGTCGATCTATCGTCAAGCAAATTGACTGGGACCCTGCCTCCTGATATGTGCTCTGGCAATCATCTTCAAACTTTGATTATCCTAGAAAACTTTCTTTTTGGTCCTATCCCTGAATCGCTCGGTAGATGCGAGTCATTGACTAGGATTCGTATGGGAGAAAATTTTCTAAATGGGTCAATACCGAAGGGCCTTTTCGGGCTTCCAAAACTCACTCAGGTTGAGCTGCAGGACAATCTCCTTTCAGGGCAGTTTCCTAATGCTAGTTCTGTTTCTGTCAATCTTGGTCAGATCATTCTATCCAACAACCAGCTTTCTGGGCAGTTGCCCCCCACGATTGGGAACTTTTCTGGTATACAGAAGCTCCTTCTTGATGGCAACAAATTCTCAGGTCAAATCCCTCCTGAGATTGGGAGGTTGCAGCAGCTCTCAAAGATAGATTTTAGTCATAACAAATTCTCAGGCCCAATTGCGCCGGAAGTAAGTCATTGCAAGCTGTTGACGTTTGTTGATCTTAGCCGCAATGAACTTTCCGGTGAGATTCCAAATGAAATCACTGGTATGCGAATATTGAATTACTTGAATCTTTCAAGAAACCATCTTGTTGGAGGCATTCCTTCATCGGTAGCCTCCATGCAAAGCTTGACGTCCGTTGATTTTTCATACAACAATCTCTCTGGCTTGGTTCCTGGCACCGGCCAGTTTAGCTATTTCAACTACACTTCATTCCTGGGTAACTCTGACCTTTGTGGCCCGTATCTGGGTCCTTGCAAAGATGGGGTTGCGAATGGCGGTCACCAGCATCACGTTAAAGGTCCGCTGTCTCCTTCTATGAAGCTCTTACTGGTGCTTGGATTGCTCGCATGTTCCATTGCATTTGCAGTTGCAGCAATAATAAAAGCTCGGTCACTGAAGAAGGCCAGCGAAGCTCGTGCATTTAAGTTAACTACATTCCAACGCTTAGACTTCTCTGTTGATGATGTTTTAGATTGCCTGAAAGAGGACAACATCATAGGGAAAGGAGGTGCAGGGATTGTCTACAAAGGTACAATGCCTAATGGGGATCAGGTTGCTGTGAAAAGATTACCAGCTATGAGTAGAAGTTCTTCTCATGATCATGGGTTCAATGCAGAGATCCAGACATTAGGGAGAATCCGACATAGACACATTGTAAGATTACTGGGTTTCTGTTCAAACAACGAGACAAATCTTCTGGTTTATGAATTCATGCCGAACGGAAGTCTAGGTGAAGTTCTTCATGGTAAGAAAGGGGGTCATTTGCTTTGGGACACTAGGTATAAGATTGCTGTGGAAGCTGCGAAGGGACTTTGCTATCTTCATCATGACTGTTCGCCACTTATAGTCCATAGAGATGTGAAATCGAACAATATCCTTCTTGACTCCAACTTTGAAGCGCATGTTGCTGATTTCGGGCTTGCCAAGTTTCTTCAAGATTCAGGAACTTCCGAATGCATGTCAGCTATTGCCGGATCATATGGATACATAGCTCCAGAGTATGCCTACACATTAAAAGTAGATGAGAAGAGCGATGTGTACAGCTTTGGAGTTGTGCTTTTGGAGCTTATAACAGGCAGGAAACCAGTTGGAGAATTCGGTGATGGGGTGGACATTGTGCAATGGGTGAGGAAAATGACAGACTCGAAGAAGGAAGAAGTCGTTAAAGTGCTTGATCCTAGACTCTCTTCTGTACCCCTTCAAGAGGTGGTGCATGTGTTTTATGTAGCCATGCTGTGTGTCGAAGAGCAGGCAGTAGAGAGACCAACTATGCGAGAAGTTGTTCAAATTCTAACCGAACTGCCAAAGCCTCCGGACTCTAAACATGGAGAGCTTGCAATCACAGAATCTTCTATGTCATCTGCAAACACCTCAGAGGCTTCAAGCACACAGTCTAAAGAATTAAAGGATGAATCTTCTCAATCGCCCCCTGCTGATCTTCTTGGCATTTGA 3033 0.4652 MRLLLLLFLLLHCNHSLSLLVSEHRALLSFKASISDDPQSALSSWNSSSEYCTWSGVTCDSRRHVSSLDLTGLNLSGILPNDLAHMPFLSNLSLAGNQFSGPLPPGISAIASLRFLNLSNNGFNGTFPPEYSQLKNIQVLDLYNNNMSGSLPRVVMEMPNLRHLHLGGNFFSGQIPPEYGRWEHLEYLAVSGNELNGTIPPEIGNLTSLRELYIGYFNNYTRGLPPEIGNLSKLVRFDAANCGLTGEIPAELGRLQNLDTLFLQVNGLSGSLTPELGSLKSLKSMDLSNNMLTGEIPDSFSELKNLTLLNLFRNKLHGAIPEFIGDLPSLEVLQLWENNFTGSIPQGLGKNGRLVFVDLSSSKLTGTLPPDMCSGNHLQTLIILENFLFGPIPESLGRCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNLLSGQFPNASSVSVNLGQIILSNNQLSGQLPPTIGNFSGIQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNKFSGPIAPEVSHCKLLTFVDLSRNELSGEIPNEITGMRILNYLNLSRNHLVGGIPSSVASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNSDLCGPYLGPCKDGVANGGHQHHVKGPLSPSMKLLLVLGLLACSIAFAVAAIIKARSLKKASEARAFKLTTFQRLDFSVDDVLDCLKEDNIIGKGGAGIVYKGTMPNGDQVAVKRLPAMSRSSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNNETNLLVYEFMPNGSLGEVLHGKKGGHLLWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWVRKMTDSKKEEVVKVLDPRLSSVPLQEVVHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPDSKHGELAITESSMSSANTSEASSTQSKELKDESSQSPPADLLGI 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1960 1010 SUPERFAMILY RNI-like 67 388 - -
Acco11g1960 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Acco11g1960 1010 Gene3D Ribonuclease Inhibitor 349 616 IPR032675 -
Acco11g1960 1010 Gene3D Phosphorylase Kinase; domain 1 651 764 - -
Acco11g1960 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 765 975 - -
Acco11g1960 1010 SMART LRR_typ_2 158 182 IPR003591 -
Acco11g1960 1010 SMART LRR_typ_2 279 303 IPR003591 -
Acco11g1960 1010 SMART LRR_typ_2 567 590 IPR003591 -
Acco11g1960 1010 SMART LRR_typ_2 327 351 IPR003591 -
Acco11g1960 1010 Gene3D Ribonuclease Inhibitor 21 176 IPR032675 -
Acco11g1960 1010 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 224 960 - -
Acco11g1960 1010 Pfam Leucine rich repeat 257 316 IPR001611 GO:0005515
Acco11g1960 1010 Pfam Leucine rich repeat 112 169 IPR001611 GO:0005515
Acco11g1960 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 616 - -
Acco11g1960 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 80 323 - -
Acco11g1960 1010 MobiDBLite consensus disorder prediction 973 998 - -
Acco11g1960 1010 MobiDBLite consensus disorder prediction 962 1010 - -
Acco11g1960 1010 Pfam Protein tyrosine and serine/threonine kinase 689 958 IPR001245 GO:0004672|GO:0006468
Acco11g1960 1010 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 656 764 - -
Acco11g1960 1010 Gene3D Transferase(Phosphotransferase) domain 1 765 979 - -
Acco11g1960 1010 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Acco11g1960 1010 Gene3D Ribonuclease Inhibitor 177 230 IPR032675 -
Acco11g1960 1010 SMART serkin_6 687 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1960 1010 ProSiteProfiles Protein kinase domain profile. 687 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1960 1010 SUPERFAMILY L domain-like 350 612 - -
Acco11g1960 1010 Gene3D Ribonuclease Inhibitor 235 347 IPR032675 -
Acco11g1960 1010 SUPERFAMILY Protein kinase-like (PK-like) 681 958 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1960 Acco-ChrAcco11 33876678 33880166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1960 12 1010 Receptor kinase-like Gene Family AT5G65700 79.423 0.0 1580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco11g1960 PK_Tyr_Ser-Thr 6.4e-47 CL0016