Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1946 ATGGCTCCTCCAGACAACATTGGCCTTGCGAACCTTCCAAATCACCCAAACCCTAACGCCTCTCCGATGTGGAACCCCGAAGAAGATGACTCTTGGGAAGTTAGAGCTTTTGCAGAAGATACACAAAACGTTATGGGCACCACTTGGCCCCCCAGATCCTACACCTGCACCTTCTGTAGAAGAGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAATGTCCACCGCCGTGACCGGGCTCGCCTCCACCGAGTTCACCCAAACTCTTCATCATTCATAATCCCACAACAAGATCTTGTTCCTGATAATGGATTGTGCCTTCTCTATCGTTTACCAGCCCCTACTAATAATAACCCCACCTTTGTCTCCGCCGGTAACGGTGCTGATCTGAATGTATGTGGAGAATCACCTTCCACACTTCTCTCCATCTCTCCTTTTCCGGCAAACAAGTTTGCTTTTTCGGTGCTGCGGTCTGGCTGTAATATTTCGTCTTACTCTAATAACTCTGCAAAAGTGGAACTTCCCACCAACAACTCCTCCATTGATGGCCACGAAGAACTTGATCTTGAGCTCCGGCTAGGCCACAGGCCAACACCCACCTGA 606 0.5066 MAPPDNIGLANLPNHPNPNASPMWNPEEDDSWEVRAFAEDTQNVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHRVHPNSSSFIIPQQDLVPDNGLCLLYRLPAPTNNNPTFVSAGNGADLNVCGESPSTLLSISPFPANKFAFSVLRSGCNISSYSNNSAKVELPTNNSSIDGHEELDLELRLGHRPTPT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1946 201 Gene3D Classic Zinc Finger 41 98 - -
Acco11g1946 201 PANTHER OS07G0101800 PROTEIN 23 198 - -
Acco11g1946 201 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Acco11g1946 201 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
Acco11g1946 201 Pfam C2H2-type zinc finger 54 78 - -
Acco11g1946 201 SMART c2h2final6 54 76 IPR013087 -
Acco11g1946 201 MobiDBLite consensus disorder prediction 1 28 - -
Acco11g1946 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1946 Acco-ChrAcco11 33736344 33736949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1946 23 198 C2H2 Transcription Factor Family AT4G17810 41.753 3.46e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco11g1946 zf-C2H2_6 3.9e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1946 11 33736344 33736949 Acco11g1946 11 33736344 33736949 ECH