Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1939 ATGGCCATGATCGTCCTGTCCAGGAATTGTGAAAATGGGAGGAAGAGTTGTATATTTCTGGGGGTAGAGTTTGAAAAAGAAAGACAGCATTTTTTAGGCTTTTATATAATGCCAGTTCCACTTGCTCCTTATCCGACGCCCCCAGCTCCATATTCTCCTCCGGCAAATGGTGCACAGAGCCAACTTGTGTGCTCTGGGTGTAGAAATCTTCTAATGTATCCAGTTGGAGCCACCTCTGTTTGTTGTGCTGTTTGCAATGCAGTCACAGCTGTGCCTCCTCCTGGCACAGAAATGGCCCAGTTGGTTTGTGGAGGCTGCCACACTTTACTCATGTACATTCGTGGAGCCACAAGTGTTCAATGCTCTTGCTGTCACACTGTGAATCTAGCTTTAGAAGCAAACCAAGTGGCCCATGTCAACTGTGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCAAGATCCGTTAAATGCGCCGTCTGCAATTTTGTGACATCAGTTGGGGTCTCAGCAAGCACGACTGAGCAGAAGTTTACTACCTAA 546 0.4689 MAMIVLSRNCENGRKSCIFLGVEFEKERQHFLGFYIMPVPLAPYPTPPAPYSPPANGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSASTTEQKFTT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1939 181 Pfam LSD1 zinc finger 103 127 IPR005735 -
Acco11g1939 181 Pfam LSD1 zinc finger 64 88 IPR005735 -
Acco11g1939 181 Pfam LSD1 zinc finger 141 165 IPR005735 -
Acco11g1939 181 SUPERFAMILY Multiheme cytochromes 64 162 IPR036280 -
Acco11g1939 181 PANTHER PROTEIN LSD1 52 91 IPR040319 -
Acco11g1939 181 NCBIfam zinc finger domain, LSD1 subclass 61 91 IPR005735 -
Acco11g1939 181 NCBIfam zinc finger domain, LSD1 subclass 138 168 IPR005735 -
Acco11g1939 181 NCBIfam zinc finger domain, LSD1 subclass 100 129 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1939 Acco-ChrAcco11 33667471 33670129 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Acco11g1939 zf-LSD1 1.2e-11 No_clan