Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1936 ATGGGAGGTGCGTCACTGCCTCCAGGTTTTCGATTCCACCCGACTGATGAAGAACTTGTGGGATATTACCTAAAAAGGAAAGTAGAGGGGCTGGAAATTGAGCTTGAAGTTATACCCGTCATTGATCTTTACAAGTTTGATCCCTGGGAATTACCTGAGAAATCATTCCTTCCAAAGAGAGATATGGAATGGTTTTTCTTCTGTCCCAGGGATCGAAAGTATCCAAATGGATCAAGGACTAACAGAGCAACCAAAGCTGGATACTGGAAAGCCACCGGAAAAGACAGAAAAATTGTGTGTCACTCTTCTCCTTACTCTGTCACCGGTTACCGCAAGACTCTGGTTTTCTACTGTGGAAGAGCTCCTTTAGGAGATCGAACCAACTGGGTCATGCACGAGTATCGCCTCTGTGATGATCTTGCCTCGGGATCATCACCAAGCTTTCAGGGTGGTTTTGCTCTGTGCCGAGTGATCAAGAAGAATGAGAAACCAAATGACGAACAAAAGGGTAAAAAGGCTGGAAGCAGTTCTGATAATGGGAGAGACAAAATGAGAATCTCAAATGAACCTTTTCATGTATCTGGTGATGTTTCATCACAAACAAGTCATCTGTACAATGAGAGTGGCCATTCGAGCCCTATTACTTCTCCCTCCAATGCGGTTCAGACGGCAGAGTTGGAACAAGCTTCCATGGAGACCAATCCTTCAGATATCTGGATCTCTCCAGATTTTATTCTCGATTCTTCAAAGGACTATCCTGAAGTACAAAATGCAGTGTCTGAATACTTTCCACAGTATGAATTATCAAGCTCAATGATGACCCCATGGCAGCCATTGGAACACACAGAAATTTCACCTTCTTCATCGTACTCAAACTTGAACGGGGAAGTTGAATTTGCTGGTGATCTTAGCATGTCAACCTACATGGAACAAGCAAACTTCATGAACTTTTATGGAAATGGCCCTATGCCCTATGGAGGATTTGATCAGATCAATTCAACCGCGTATCCTAGACATTTCTGA 1023 0.435 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDLYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKIVCHSSPYSVTGYRKTLVFYCGRAPLGDRTNWVMHEYRLCDDLASGSSPSFQGGFALCRVIKKNEKPNDEQKGKKAGSSSDNGRDKMRISNEPFHVSGDVSSQTSHLYNESGHSSPITSPSNAVQTAELEQASMETNPSDIWISPDFILDSSKDYPEVQNAVSEYFPQYELSSSMMTPWQPLEHTEISPSSSYSNLNGEVEFAGDLSMSTYMEQANFMNFYGNGPMPYGGFDQINSTAYPRHF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1936 340 MobiDBLite consensus disorder prediction 192 233 - -
Acco11g1936 340 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Acco11g1936 340 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Acco11g1936 340 MobiDBLite consensus disorder prediction 163 233 - -
Acco11g1936 340 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Acco11g1936 340 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Acco11g1936 340 FunFam Nac domain-containing protein 86 15 163 - -
Acco11g1936 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 222 - -
Acco11g1936 340 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1936 Acco-ChrAcco11 33649630 33651153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1936 1 307 NAC Transcription Factor Family AT4G17980 57.742 1.74e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco11g1936 NAM 6e-38 No_clan