Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1920 ATGATTCTTAATGAAGTTACCAGTTGGGTAGGGGCTGAGAACGATGCCAAACCAGCTATGGTTTGTACTGCCAATGATTTACAAAGCTGGAAAGATTTTCCCAAGGGACTTAGGGTTCTTCTCCTTGATGGGGACACCAATTCTGCTGCCGATATAAGGGCAAAGCTTGAGGTCATGGACTATATTGTTTCTATATTCTGCAATGAAAATGAAGCCTTGTCGGCGATCTCAAGCAAACCTGAAGGCTTCCATGTTGCCATTGTGGAGGTTAGTACAAGCAATAACCTGGGGTGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAATGATCATTGCCTTAGCACCATGATGAAGTGTATAGCACTTGGTGCAGTTGAGTTCCTAAGAAAACCACTCTCTGAGGAGAAACTCAGGAATATCTGGCAGCATGTGGTTCACAAGGCATTTAATGCTGGGGCAACTGTCCTGCCTGAATCACTAAAACCCATCAAAGAATCCGTGGTATCGATGTTGCAGCTCCATACAGATAACAAGGAAGAGCAAAGTAAAATCTCTATAGATATAGAGAAAGTATCGAGGTTTAGTGAAAATGACCATGAGCTGTCATCTGGGAGCGATAATAAATACCCAGCTCCTTCAACTCCACAATTAAAACAGGGGCTTAGATCACTGGATGATGGAGATTGCCATGAACAGACTCATTGCATGACTGAGAAAGAGAGTGGAGAACCGGATGGGGAAACTATATTTGTCGAAACTACATGTGGGAATTCAAATTCTGAGGATGCTACACCTCAACCAAGTAAACCTGAAACGACCCTAGTCAAGAAGGAAGAGGACTTTGCCAATGGTTCTAAGAGTGAGAGTGATGTTTCTACACATGTTCATGATGGAAATTTTGTCAGCAGCAATGATGATAGTACTCCACCTCCAAAAAAAGTTGGTGTTGTCAGTGATGCATGTGAGATCACAGCTAATAAAAAGAAATCAAAGAAGATGAAGGTAGACTGGACGCCTGAACTTCACAACAAATTTGTTCAGGCGGTGGAAAAACTTGGTATTGATCAGGCCATACCTTCTCGAATACTGGAGCTAATGGATGTGGAGGGCTTGACTAGGCATAATGTGGCTAGCCATCTTCAGAAATACAGAATGCACAAGAGACATATCTTGCCCAAGGAAGAAGATCGAAGATGGCCAAATCAAAGAGATATAATGCAAAGGAGCTATTATGTACCGAGACCAACAATGGCCTATCCTTCATATCATTCTAATCACACCTTATCTCCAGCTCCTATATATCCTATGTGGGGACAACTAGGAAGTCAACTGGCTGGTGTACAGATGTGGGCCCCCCCTAACTATCACATATGGCAGCCTTTTCCTGGGATGCACGCAGAAGCATGGGGTTGCCCCGTGTTGCCACCTTCTCAAAATCCTTGCTTTTTCCACACTCAACATACACCTGGATTGCTTAGTGCTAATAACGTTGAGTATAACCCAAGCATGCCTCCAAGTTTGTTAGAGCATCATCCGGCAGATGAAGTTGTTGATAAGGTTGTAAAGGAGGCAATAAGCAAGCCATGGCTACCCTTGCCCTTAGGACTCAAACCTCCTTCAACAGATAGTGTATTGGCTGAACTCTCTAGGCAAGGCATATCTACCGTCCCTCGTAGCTCTAAATCTACATAG 1710 0.4345 MILNEVTSWVGAENDAKPAMVCTANDLQSWKDFPKGLRVLLLDGDTNSAADIRAKLEVMDYIVSIFCNENEALSAISSKPEGFHVAIVEVSTSNNLGCFKFLENAKDLPTIMTSNDHCLSTMMKCIALGAVEFLRKPLSEEKLRNIWQHVVHKAFNAGATVLPESLKPIKESVVSMLQLHTDNKEEQSKISIDIEKVSRFSENDHELSSGSDNKYPAPSTPQLKQGLRSLDDGDCHEQTHCMTEKESGEPDGETIFVETTCGNSNSEDATPQPSKPETTLVKKEEDFANGSKSESDVSTHVHDGNFVSSNDDSTPPPKKVGVVSDACEITANKKKSKKMKVDWTPELHNKFVQAVEKLGIDQAIPSRILELMDVEGLTRHNVASHLQKYRMHKRHILPKEEDRRWPNQRDIMQRSYYVPRPTMAYPSYHSNHTLSPAPIYPMWGQLGSQLAGVQMWAPPNYHIWQPFPGMHAEAWGCPVLPPSQNPCFFHTQHTPGLLSANNVEYNPSMPPSLLEHHPADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISTVPRSSKST 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1920 569 MobiDBLite consensus disorder prediction 210 226 - -
Acco11g1920 569 MobiDBLite consensus disorder prediction 285 321 - -
Acco11g1920 569 MobiDBLite consensus disorder prediction 285 299 - -
Acco11g1920 569 SUPERFAMILY CheY-like 35 153 IPR011006 -
Acco11g1920 569 Gene3D - 334 396 - -
Acco11g1920 569 Gene3D - 29 157 - -
Acco11g1920 569 SUPERFAMILY Homeodomain-like 337 395 IPR009057 -
Acco11g1920 569 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 335 394 IPR017930 -
Acco11g1920 569 MobiDBLite consensus disorder prediction 260 279 - -
Acco11g1920 569 Pfam Myb-like DNA-binding domain 341 390 IPR001005 -
Acco11g1920 569 ProSiteProfiles Response regulatory domain profile. 38 151 IPR001789 GO:0000160
Acco11g1920 569 FunFam Two-component response regulator-like APRR2 36 162 - -
Acco11g1920 569 MobiDBLite consensus disorder prediction 201 231 - -
Acco11g1920 569 FunFam Two-component response regulator 334 397 - -
Acco11g1920 569 MobiDBLite consensus disorder prediction 260 277 - -
Acco11g1920 569 MobiDBLite consensus disorder prediction 300 315 - -
Acco11g1920 569 NCBIfam myb-like DNA-binding domain, SHAQKYF class 338 393 IPR006447 GO:0003677
Acco11g1920 569 PANTHER TRANSCRIPTION ACTIVATOR GLK1 20 565 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1920 Acco-ChrAcco11 33481357 33486495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1920 20 566 Response Regulator Gene Family AT4G18020 48.077 2.57e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Acco11g1920 Myb_DNA-binding 2.6e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1920 11 33481357 33486495 Acco12g1753 12 28702497 28706644 CCT