Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1893 ATGTCTAGCGGTCGGGGTGTGGCGGGAAGAACACGGTCTAGACGAGGTATCGCTTGGAAACAATACTTTGATAATAAGCGTACGAAACAGCATGAGGTTGAGGTAATTTCATCCGAAGAAGACTCTGGTGATTATGTATCTGATGATGACGATGATGTGAGTATAATCAAAGATATCAAACCAGAGGAAGACAATGATAAGGAAATGTCAGATAGAATTCAGCCTAGACAAGTACTTAATGAGAGGGAGGTGGAAATGGCATCTCAAAAAGAATGCTCTTCAAGCGACACTACTGAATCTTCTGATGATGGTGGTGGTGGTGGTGATTATGAAGCTTCACCACGCGGTGACGACGTCGAGAAAGATCTCACCGGAAGCGGAAGCACAGCTACACCAACACATTGTGACAACGACGTTGAGAAAGAAGTTACCAGCAGCAGAAGCAGAGGCAGAGGTGTAGCTAGTAGAACACGTTCTCATTTTCGGGCTTCGAAATTGAAAAACACAAAAGTAGGGACAGTCATTAATCCCATAAATCTTGATGATGAAGATGAGCAAGAGCAAGACAAAGAGGAGCTTGAAACAACTATGAAACCTGTTGATGAGGATTTAGCTTCTTCCTCAACCTCAAGTGATGAGGATGAAAGTCCAAAAGTTTCCCGTAAACGGAGAAGAAAAGTGCTTGATGATTTCAAGATTCGTCCGGAGCATCTCCCTGGTGAGGGGCTAGTGCCTCTTGAGAACTCAACTTCCTCAAGCGTTGAGGAAAGAAATCCGGATGTTATGGCGAAGCCTCTATTGGTGTCATCGCCACCGTTGAAATTGGAGTCTGAGAATATGTTAGAAAGACTATGGGCTGAGATGGACATGGCTGACGAAAATCCACAAGAAACCATGGATAAGGCGTCACGGTCACCGGAGAGTTCAGAGCCTGAGGAAGATGGTAAACTATGTTCTGTTAGTCCTTCTGAAGATGAGGAAGGAATTCCAGAAGATATCTATCCAATTCTATCATCAAAGTCCACTTTTGGGATTAAGGCACCACAACCTCTTGAGAAATCAGAGTCGGAGGACGAATGTGATCTCCTGTGGGCTGAGCTGGAGGACTGTTTACTAAATTGTGAAGAAGCTACTGATGATGAAGATGCTTCTCATCAGGTTGAACATAGTCATTCTAATGACCCAAATCCGGAAGGTGAAGAGAGTATAGCTAGTCGGTGTGGACGAGGAGATCATGTTCCTACTATGAACGAAGAAATTGGCTTGGTGTGTGTACATTGCAGGCATATAATTCGGGACATTAAGGATTGTGACCCTGAGTTTGGCAAGCATCCATCGGGAAGACCAGGTGGGAGATACTCATACCGTCCGGGGGACTCCGACGACTCTTTCTCTAACGACTCAGAGCATGAAAATTCTGGGATTGATGATAAATCTAGGTTTCTTACCTATGCTTCCACTGGAACTGTGTGGGACATAGTTCCAAGAGCAAAGAAGAGGATGTACAGTCACCAGAAGGAAGCCTTTGAATTTCTCTGGAAAAATCTAGCTGGTGGAATTGTTATTGACCAGTTGGAAAAGAAATTAGATTTTTCCGGTGGAGGTGGCTGCATAATTTCTCATGCGCCTGGCACTGGCAAAACTTTCCTCACCATTGCTTTTCTCAAGGCCTTCATGAAGCGATACCCTAGTTGCAGGCCCATGATCATAGCTCCCAGCAACATTCTTAATACATGGGAGAGAGAATTAAAGAAGTGGCAAGTGGGTGATTCTGTTCCTTTTCACAATCTGAACAAGCTTGAACTTTCTGGGGAAGAGACTCAATCTGCCATAAGCCGTTATCTTACACGGAGGTGCGGCCGGAGACTCAATAAAAGTGCAATCCGACGGATTAAGGCTTGTTCATGGAGAGAGGCTAAAAGCATATTAGGAATCAGCTACACTTTATTTGATAGGCTTGTTAGAAAGGGCTATGATGAAGTGGTAAAGAAAGCCCTTTTTGAGCTTCCTGGGCTGGTGGTTCTTGATGAGGGCCACACAGCTCGCAATGCTAGGAGTCGCTTGTGGGAAGCATTGTCTAATATAAAGACAAAGAGACGAATCATACTCTCTGGGACTCCTTTCCAGAATAACTTTACTGAGCTTAACAATACCCTCCGCTTGTCCAAACCTAATGTAACTAACGGGAATTTGGAATTTATGCTTAAATCATATGACAAAGTAGAGAGCCATGGTGAAAGAACTCAGGTCATTGCTCAAATCAGAGACGTGATCAAACCGTTTGTGCACGTGCATAAGGGTACTGTGCTGGAGGAGAAACTTCCTGGGTTGAAGGAGTCAGTAGTTAGTTTAAAGCCCTCTCCGTCGCAGATGTTCGTTTTTGAGTACATTCAAAAGTTAAGGGAGGGCCAAGAGGGATGCTCAAACTGGTTTAGATTTGAACATTTGATGGCTGTATCTTCTGTACATCCCTCTCTTTTTGTTGACGAGCTCACTCAATTTCCAAAAAGTGAAAGAGTGCAATTGCATGCTATATTAGCAACACTAGATTTGTCCCCAGAGGCTGGAGTTAAAACAAAGTTTGTATTGGACTTCATCAAGCAAAGCGAGCTTATGAAGGAAAAGGTTCTGATTTTTAGCCAGTACCTACATCCGTTGGAATTTCTGGCAGAGCAGATCAACTCTCTCTTTCATTGGAGAGAAGGAGAGCAGATGATGATTATTCATGGAAGGACCCATGAAGTGACACGACAAGCTTCCATAGATGCTTTCAATGATCCCAGTAGCAAAGCGAGGGTGATGTTAGCATCGACCAAGGCTTGTTATGAAGGGATCAATCTGATTGGAGCTTCAAGAGTAATTTTGCTTGATACTTTATGGAATCCCTCAGCAGAAAGGCAAGCTGTGTCTCGTGCTTATCGGCTTGGACAGAAGAAAGTTGTGTACACTTATCGTCTCATAACTGCTGGGACATGGGATGAACAGAAGCTTTGCATTCAAGCTGAGAAGGATGAATTGTCTGAGTTGGTCTTTTCTGCTTCCCATGAAGCTGCCCATCGCCAGAATATGTCTCCCAACGGTTTTGAGGATAAACTTTTGGAAAAGATGGGTCCTAAATTTGGGACGAAATTCACCAAGAGGGGAGTTACTATCTTAGTTGAAACTGAAAAGTAG 3174 0.4382 MSSGRGVAGRTRSRRGIAWKQYFDNKRTKQHEVEVISSEEDSGDYVSDDDDDVSIIKDIKPEEDNDKEMSDRIQPRQVLNEREVEMASQKECSSSDTTESSDDGGGGGDYEASPRGDDVEKDLTGSGSTATPTHCDNDVEKEVTSSRSRGRGVASRTRSHFRASKLKNTKVGTVINPINLDDEDEQEQDKEELETTMKPVDEDLASSSTSSDEDESPKVSRKRRRKVLDDFKIRPEHLPGEGLVPLENSTSSSVEERNPDVMAKPLLVSSPPLKLESENMLERLWAEMDMADENPQETMDKASRSPESSEPEEDGKLCSVSPSEDEEGIPEDIYPILSSKSTFGIKAPQPLEKSESEDECDLLWAELEDCLLNCEEATDDEDASHQVEHSHSNDPNPEGEESIASRCGRGDHVPTMNEEIGLVCVHCRHIIRDIKDCDPEFGKHPSGRPGGRYSYRPGDSDDSFSNDSEHENSGIDDKSRFLTYASTGTVWDIVPRAKKRMYSHQKEAFEFLWKNLAGGIVIDQLEKKLDFSGGGGCIISHAPGTGKTFLTIAFLKAFMKRYPSCRPMIIAPSNILNTWERELKKWQVGDSVPFHNLNKLELSGEETQSAISRYLTRRCGRRLNKSAIRRIKACSWREAKSILGISYTLFDRLVRKGYDEVVKKALFELPGLVVLDEGHTARNARSRLWEALSNIKTKRRIILSGTPFQNNFTELNNTLRLSKPNVTNGNLEFMLKSYDKVESHGERTQVIAQIRDVIKPFVHVHKGTVLEEKLPGLKESVVSLKPSPSQMFVFEYIQKLREGQEGCSNWFRFEHLMAVSSVHPSLFVDELTQFPKSERVQLHAILATLDLSPEAGVKTKFVLDFIKQSELMKEKVLIFSQYLHPLEFLAEQINSLFHWREGEQMMIIHGRTHEVTRQASIDAFNDPSSKARVMLASTKACYEGINLIGASRVILLDTLWNPSAERQAVSRAYRLGQKKVVYTYRLITAGTWDEQKLCIQAEKDELSELVFSASHEAAHRQNMSPNGFEDKLLEKMGPKFGTKFTKRGVTILVETEK 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1893 1057 Gene3D - 478 763 IPR038718 -
Acco11g1893 1057 MobiDBLite consensus disorder prediction 50 89 - -
Acco11g1893 1057 MobiDBLite consensus disorder prediction 284 321 - -
Acco11g1893 1057 MobiDBLite consensus disorder prediction 284 336 - -
Acco11g1893 1057 Gene3D - 775 1045 IPR027417 -
Acco11g1893 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 1019 IPR027417 -
Acco11g1893 1057 Pfam Helicase conserved C-terminal domain 860 976 IPR001650 -
Acco11g1893 1057 MobiDBLite consensus disorder prediction 379 410 - -
Acco11g1893 1057 MobiDBLite consensus disorder prediction 438 475 - -
Acco11g1893 1057 CDD SF2_C_SNF 858 987 - -
Acco11g1893 1057 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 38 1037 IPR044567 GO:0080188
Acco11g1893 1057 SMART ultradead3 497 734 IPR014001 -
Acco11g1893 1057 Pfam SNF2-related domain 534 798 IPR000330 GO:0005524|GO:0140658
Acco11g1893 1057 SMART helicmild6 887 976 IPR001650 -
Acco11g1893 1057 MobiDBLite consensus disorder prediction 27 265 - -
Acco11g1893 1057 MobiDBLite consensus disorder prediction 214 237 - -
Acco11g1893 1057 MobiDBLite consensus disorder prediction 379 396 - -
Acco11g1893 1057 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 864 1036 IPR001650 -
Acco11g1893 1057 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 725 IPR014001 -
Acco11g1893 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 734 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1893 Acco-ChrAcco11 33161667 33165630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1893 867 1006 RAD5 or RAD16-like Gene Family AT5G43530 33.113 1.45e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco11g1893 SNF2_N 8.8e-27 CL0023