Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1873 ATGGCTGATCCATCTTCCTCAGCTCGCACTTCCAATTCCGGCCAGTTTACTTACTCCGACGGATCCTACTTCCCCATGCCTTTCCATCTTCAGCAATCTGCTTCCACGACGTCGTCTCACTATGCTTCGCCATATGTGGCGGCGTCACCGGCGGTGCCAGTTCCTCCTCAAGCGCCTCCGGCTGCTGTTCCCGGCGTTTACTCTTACCCACAGTATCAGCAGGCGCAGCAGTTATTCCAACGGGATGCACAGACGATCACACCCGAGGCTCTCGAGAATGTCAAAGCAGCCATTGCTAACAGCGAGATCGAGCACAAAGCAGAGACCAAAAAGAAAGCGATTCCCCGCAAAGCTGCGGGGCAATCATGGGAGGATCCTTCGCTGACAGAATGGCCAGAGAATGATCATAGGCTGTTCTGTGGTGATCTTGGTAACGAGGTAAATGACGATGTCCTTTCGAAAGCTTTTTCGCGATTTCCTTCATTTAACATGGCCAGAGTTGTGAGGGATAAGCGGAGTGGAAAAACAAAAGGCTACGGATTTGTTAGCTTTGCGGATCCTTCTGATCTTGCTGTTGCTCTTAAAGAGATGAACGGTAAATATGTTGGAAATAGGCCGATTAAATTGTGCAAGAGTAAGTGGAAGGAGAGAACGGATTATGAAGCTCTAGACAAACACAAGAAACAATCTCGGAAGAAACCGAAACCTTCAAAAGTGGGTGTATTGCATTACTGA 735 0.4884 MADPSSSARTSNSGQFTYSDGSYFPMPFHLQQSASTTSSHYASPYVAASPAVPVPPQAPPAAVPGVYSYPQYQQAQQLFQRDAQTITPEALENVKAAIANSEIEHKAETKKKAIPRKAAGQSWEDPSLTEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYEALDKHKKQSRKKPKPSKVGVLHY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1873 244 Gene3D - 71 210 IPR012677 -
Acco11g1873 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 225 - -
Acco11g1873 244 MobiDBLite consensus disorder prediction 221 244 - -
Acco11g1873 244 Coils Coil 91 111 - -
Acco11g1873 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
Acco11g1873 244 MobiDBLite consensus disorder prediction 228 244 - -
Acco11g1873 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Acco11g1873 244 SUPERFAMILY RNA-binding domain, RBD 121 218 IPR035979 GO:0003676
Acco11g1873 244 CDD RRM_RBM42 130 212 IPR034215 -
Acco11g1873 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Acco11g1873 244 MobiDBLite consensus disorder prediction 108 128 - -
Acco11g1873 244 FunFam RNA-binding protein 42 71 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1873 Acco-ChrAcco11 33005306 33006040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1873 117 229 Eukaryotic Initiation Factors Gene Family AT1G71770 28.319 9.31e-09 53.5